Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15458 Avicennia marina HOM05D002394 ORTHO05D002508 9.0e-62 240.0 112 100.0
MSTRG.3345 Avicennia marina HOM05D002394 ORTHO05D002508 2.4e-38 162.2 92 80.4
Duzib187G0279 Durio zibethinus HOM05D002394 ORTHO05D002508 2.9e-36 155.2 92 77.2
Oeu020661.1 Olea europaea HOM05D002394 ORTHO05D002508 3.8e-36 154.8 92 75.0
Peaxi162Scf00629g00311 Petunia axillaris HOM05D002394 ORTHO05D002508 3.8e-36 154.8 92 76.1
QL02p039501 Quercus lobata HOM05D002394 ORTHO05D002508 6.5e-36 154.1 92 76.1
Gohir.A05G370466 Gossypium hirsutum HOM05D002394 ORTHO05D002508 8.5e-36 153.7 92 76.1
Gohir.A05G370600 Gossypium hirsutum HOM05D002394 ORTHO05D002508 8.5e-36 153.7 92 76.1
Gohir.D04G045000 Gossypium hirsutum HOM05D002394 ORTHO05D002508 8.5e-36 153.7 92 76.1
Gorai.012G050200 Gossypium raimondii HOM05D002394 ORTHO05D002508 8.5e-36 153.7 92 76.1
Solyc02g088590.4 Solanum lycopersicum HOM05D002394 ORTHO05D002508 8.5e-36 153.7 92 75.0
Sopen02g033320 Solanum pennellii HOM05D002394 ORTHO05D002508 8.5e-36 153.7 92 75.0
SGA_v2.0_scaffold148G36482 Striga asiatica HOM05D002394 ORTHO05D002508 8.5e-36 153.7 92 75.0
COL.COLO4_21379 Corchorus olitorius HOM05D002394 ORTHO05D002508 1.1e-35 153.3 92 76.1
Glyma.13G058800 Glycine max HOM05D002394 ORTHO05D002508 1.1e-35 153.3 92 75.0
Oeu000856.1 Olea europaea HOM05D002394 ORTHO05D002508 1.1e-35 153.3 92 75.0
Thecc.04G091100 Theobroma cacao HOM05D002394 ORTHO05D002508 1.1e-35 153.3 92 76.1
TWI32G0249 Tripterygium wilfordii HOM05D002394 ORTHO05D002508 1.1e-35 153.3 92 76.1
TWI34G1813 Tripterygium wilfordii HOM05D002394 ORTHO05D002508 1.1e-35 153.3 92 76.1
ClCG05G014070 Citrullus lanatus HOM05D002394 ORTHO05D002508 1.4e-35 152.9 92 75.0
Ciclev10012574m.g Citrus clementina HOM05D002394 ORTHO05D002508 1.4e-35 152.9 92 73.9
Migut.K01292 Erythranthe guttata HOM05D002394 ORTHO05D002508 1.4e-35 152.9 92 76.1
FAN09G2709 Fragaria x ananassa HOM05D002394 ORTHO05D002508 1.4e-35 152.9 92 75.0
Hma1.2p1_1741F.1_g300110 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 1.4e-35 152.9 92 75.0
Hma1.2p1_3742F.1_g337440 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 1.4e-35 152.9 92 75.0
Ah.01g015120 Amaranthus hybridus HOM05D002394 ORTHO05D002508 1.9e-35 152.5 92 75.0
Lalb_Chr06g0175081 Lupinus albus HOM05D002394 ORTHO05D002508 1.9e-35 152.5 92 73.9
RcHm_v2.0_Chr2g0166511 Rosa chinensis HOM05D002394 ORTHO05D002508 1.9e-35 152.5 92 76.1
EL10Ac2g03083 Beta vulgaris HOM05D002394 ORTHO05D002508 2.5e-35 152.1 92 73.9
Glyma.19G027700 Glycine max HOM05D002394 ORTHO05D002508 2.5e-35 152.1 92 73.9
Lj2g0005081 Lotus japonicus HOM05D002394 ORTHO05D002508 2.5e-35 152.1 92 75.0
MD09G1061500 Malus domestica HOM05D002394 ORTHO05D002508 2.5e-35 152.1 92 76.1
Manes.02G051300 Manihot esculenta HOM05D002394 ORTHO05D002508 2.5e-35 152.1 92 73.9
Peaxi162Scf00166g00652 Petunia axillaris HOM05D002394 ORTHO05D002508 2.5e-35 152.1 92 75.0
CSS0007324 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 3.2e-35 151.8 92 73.9
CSS0038318 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 3.2e-35 151.8 92 73.9
CiPaw.03G091300 Carya illinoinensis HOM05D002394 ORTHO05D002508 3.2e-35 151.8 92 73.9
AUR62018153 Chenopodium quinoa HOM05D002394 ORTHO05D002508 3.2e-35 151.8 92 72.8
MELO3C014931.2 Cucumis melo HOM05D002394 ORTHO05D002508 3.2e-35 151.8 92 75.0
CsaV3_3G026310 Cucumis sativus L. HOM05D002394 ORTHO05D002508 3.2e-35 151.8 92 75.0
Duzib264G0540 Durio zibethinus HOM05D002394 ORTHO05D002508 3.2e-35 151.8 92 75.0
CSS0019800 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 73.9
CSS0030202 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 73.9
CAN.G206.201 Capsicum annuum HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 73.9
Cfa007626 Carpinus fangiana HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 73.9
Ca_04870_v3 Cicer arietinum L. HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 71.7
Haze_14470 Corylus avellana HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 73.9
FvH4_6g47430 Fragaria vesca HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 75.0
FAN02G4530 Fragaria x ananassa HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 75.0
FAN05G1901 Fragaria x ananassa HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 75.0
FAN14G1202 Fragaria x ananassa HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 75.0
Hma1.2p1_0221F.1_g093090 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 73.9
Lalb_Chr24g0396391 Lupinus albus HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 75.0
Rhsim10G0045400 Rhododendron simsii HOM05D002394 ORTHO05D002508 4.2e-35 151.4 92 72.8
Lj3g0026743 Lotus japonicus HOM05D002394 ORTHO05D002508 5.5e-35 151.0 92 73.9
Oeu023715.1 Olea europaea HOM05D002394 ORTHO05D002508 5.5e-35 151.0 92 73.9
Potri.004G125000 Populus trichocarpa HOM05D002394 ORTHO05D002508 5.5e-35 151.0 92 73.9
VMungo1080G1371 Vigna mungo HOM05D002394 ORTHO05D002508 5.5e-35 151.0 92 75.0
Manes.01G098800 Manihot esculenta HOM05D002394 ORTHO05D002508 7.2e-35 150.6 92 73.9
Ah.01g015130 Amaranthus hybridus HOM05D002394 ORTHO05D002508 9.4e-35 150.2 92 73.9
CSS0014787 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 9.4e-35 150.2 92 72.8
Gohir.D09G010500 Gossypium hirsutum HOM05D002394 ORTHO05D002508 1.2e-34 149.8 92 75.0
Gorai.006G012100 Gossypium raimondii HOM05D002394 ORTHO05D002508 1.2e-34 149.8 92 75.0
Psat1g069520 Pisum sativum HOM05D002394 ORTHO05D002508 1.2e-34 149.8 92 70.7
Prupe.3G258700 Prunus persica HOM05D002394 ORTHO05D002508 1.2e-34 149.8 92 73.9
vmacro05663 Vaccinium macrocarpon HOM05D002394 ORTHO05D002508 1.2e-34 149.8 92 71.7
Actinidia01977 Actinidia chinensis HOM05D002394 ORTHO05D002508 1.6e-34 149.4 92 71.7
CiPaw.04G058200 Carya illinoinensis HOM05D002394 ORTHO05D002508 1.6e-34 149.4 92 71.7
AUR62042565 Chenopodium quinoa HOM05D002394 ORTHO05D002508 1.6e-34 149.4 92 71.7
Cc07_g03920 Coffea canephora HOM05D002394 ORTHO05D002508 1.6e-34 149.4 92 73.9
Sc10g0003270 Simmondsia chinensis HOM05D002394 ORTHO05D002508 1.6e-34 149.4 92 72.8
Phvul.008G035700 Phaseolus vulgaris HOM05D002394 ORTHO05D002508 2.1e-34 149.1 92 72.8
TAR371G0698 Trochodendron aralioides HOM05D002394 ORTHO05D002508 2.1e-34 149.1 92 69.6
VMungo0464G0804 Vigna mungo HOM05D002394 ORTHO05D002508 2.1e-34 149.1 92 71.7
Glyma.08G242000 Glycine max HOM05D002394 ORTHO05D002508 2.7e-34 148.7 92 72.8
Sabra04G0089600 Salix brachista HOM05D002394 ORTHO05D002508 2.7e-34 148.7 92 71.7
vmacro18161 Vaccinium macrocarpon HOM05D002394 ORTHO05D002508 2.7e-34 148.7 92 71.7
arahy.Tifrunner.gnm1.ann1.GVJS70 Arachis hypogaea HOM05D002394 ORTHO05D002508 3.6e-34 148.3 92 71.7
Atru.chr8.389 Acer truncatum HOM05D002394 ORTHO05D002508 4.7e-34 147.9 92 73.9
CSS0044910 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 4.7e-34 147.9 90 73.3
Duzib147G0526 Durio zibethinus HOM05D002394 ORTHO05D002508 4.7e-34 147.9 92 72.8
Glyma.18G264200 Glycine max HOM05D002394 ORTHO05D002508 4.7e-34 147.9 92 72.8
PGR004G1793 Punica granatum HOM05D002394 ORTHO05D002508 4.7e-34 147.9 90 73.3
Gohir.A09G011500 Gossypium hirsutum HOM05D002394 ORTHO05D002508 6.1e-34 147.5 92 72.8
Medtr6g013530 Medicago truncatula HOM05D002394 ORTHO05D002508 6.1e-34 147.5 92 69.6
Phvul.004G033800 Phaseolus vulgaris HOM05D002394 ORTHO05D002508 6.1e-34 147.5 92 70.7
Hund13167 Selenicereus undatus HOM05D002394 ORTHO05D002508 6.1e-34 147.5 90 72.2
arahy.Tifrunner.gnm1.ann1.56XWA4 Arachis hypogaea HOM05D002394 ORTHO05D002508 7.9e-34 147.1 92 70.7
Dinv33199 Davidia involucrata HOM05D002394 ORTHO05D002508 7.9e-34 147.1 92 71.7
Rhsim08G0073700 Rhododendron simsii HOM05D002394 ORTHO05D002508 7.9e-34 147.1 92 70.7
Sed0005703 Sechium edule HOM05D002394 ORTHO05D002508 7.9e-34 147.1 92 71.7
VMungo1383G0104 Vigna mungo HOM05D002394 ORTHO05D002508 7.9e-34 147.1 92 71.7
arahy.Tifrunner.gnm1.ann1.9HCL1H Arachis hypogaea HOM05D002394 ORTHO05D002508 1.0e-33 146.7 92 73.9
arahy.Tifrunner.gnm1.ann1.BT624K Arachis hypogaea HOM05D002394 ORTHO05D002508 1.0e-33 146.7 92 73.9
CANSAT64G1973 Cannabis sativa HOM05D002394 ORTHO05D002508 1.0e-33 146.7 92 72.8
TPR.G26203 Trifolium pratense HOM05D002394 ORTHO05D002508 1.0e-33 146.7 90 70.0
Phvul.005G159500 Phaseolus vulgaris HOM05D002394 ORTHO05D002508 1.4e-33 146.4 92 70.7
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 1.8e-33 146.0 92 70.7
Lj4P116T28 Lonicera japonica HOM05D002394 ORTHO05D002508 2.3e-33 145.6 92 71.7
THA.LOC104823894 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 2.3e-33 145.6 92 69.6
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 3.0e-33 145.2 92 69.6
Nitab4.5_0000565g0120 Nicotiana tabacum HOM05D002394 ORTHO05D002508 3.9e-33 144.8 92 75.0
Lju41C6T9 Lonicera japonica HOM05D002394 ORTHO05D002508 5.1e-33 144.4 92 68.5
Lsat_1_v5_gn_4_170261 Lactuca sativa HOM05D002394 ORTHO05D002508 6.7e-33 144.1 92 68.5
Lalb_Chr21g0318461 Lupinus albus HOM05D002394 ORTHO05D002508 6.7e-33 144.1 92 71.7
Potri.017G090300 Populus trichocarpa HOM05D002394 ORTHO05D002508 6.7e-33 144.1 92 69.6
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 8.8e-33 143.7 92 69.6
TAR629G0704 Trochodendron aralioides HOM05D002394 ORTHO05D002508 8.8e-33 143.7 92 68.5
DCAR_011055 Daucus carota HOM05D002394 ORTHO05D002508 1.1e-32 143.3 92 67.4
ECA238G1727 Erigeron canadensis HOM05D002394 ORTHO05D002508 1.1e-32 143.3 92 68.5
Medtr7g012790 Medicago truncatula HOM05D002394 ORTHO05D002508 1.1e-32 143.3 92 70.7
Thhalv10014230m.g Eutrema salsugineum HOM05D002394 ORTHO05D002508 1.5e-32 142.9 92 68.5
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 1.5e-32 142.9 92 67.4
BcaB01g05056 Brassica carinata HOM05D002394 ORTHO05D002508 2.0e-32 142.5 92 68.5
A03p07140 Brassica napus HOM05D002394 ORTHO05D002508 2.0e-32 142.5 92 68.5
C03p08130 Brassica napus HOM05D002394 ORTHO05D002508 2.0e-32 142.5 92 68.5
BolC3t13310H Brassica oleracea HOM05D002394 ORTHO05D002508 2.0e-32 142.5 92 68.5
BraA03t10036Z Brassica rapa HOM05D002394 ORTHO05D002508 2.0e-32 142.5 92 68.5
Aa31LG11G14140 Aethionema arabicum HOM05D002394 ORTHO05D002508 2.6e-32 142.1 92 67.4
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 3.3e-32 141.7 92 68.5
TPR.G33451 Trifolium pratense HOM05D002394 ORTHO05D002508 3.3e-32 141.7 92 69.6
HPP92_012503 Vanilla planifolia HOM05D002394 ORTHO05D002508 5.7e-32 141.0 92 67.4
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 7.4e-32 140.6 92 68.5
Eucgr.J01222 Eucalyptus grandis HOM05D002394 ORTHO05D002508 9.7e-32 140.2 92 68.5
Psat3g200840 Pisum sativum HOM05D002394 ORTHO05D002508 9.7e-32 140.2 92 69.6
Aqoxy3G00464 Aquilegia oxysepala HOM05D002394 ORTHO05D002508 1.3e-31 139.8 92 66.3
Ca_06809_v3 Cicer arietinum L. HOM05D002394 ORTHO05D002508 1.3e-31 139.8 92 69.6
CDE10G0416 Ceratophyllum demersum HOM05D002394 ORTHO05D002508 4.8e-31 137.9 90 64.4
Aa31LG9G16630 Aethionema arabicum HOM05D002394 ORTHO05D002508 8.2e-31 137.1 92 66.3
AL7G51110 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 1.4e-30 136.3 92 66.3
AT5G39360 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 1.4e-30 136.3 92 66.3
BcaB06g27293 Brassica carinata HOM05D002394 ORTHO05D002508 1.4e-30 136.3 92 65.2
A04p12050 Brassica napus HOM05D002394 ORTHO05D002508 1.4e-30 136.3 92 65.2
C04p45700 Brassica napus HOM05D002394 ORTHO05D002508 1.4e-30 136.3 92 65.2
BolC4t26154H Brassica oleracea HOM05D002394 ORTHO05D002508 1.4e-30 136.3 92 65.2
BraA04t16869Z Brassica rapa HOM05D002394 ORTHO05D002508 1.4e-30 136.3 92 65.2
Carub.0007s3656 Capsella rubella HOM05D002394 ORTHO05D002508 1.8e-30 136.0 92 65.2
CARHR263030 Cardamine hirsuta HOM05D002394 ORTHO05D002508 2.4e-30 135.6 92 64.1
Thhalv10027898m.g Eutrema salsugineum HOM05D002394 ORTHO05D002508 4.1e-30 134.8 92 65.2
BcaB01g05054 Brassica carinata HOM05D002394 ORTHO05D002508 5.3e-30 134.4 92 67.4
PSO017G0834 Papaver somniferum HOM05D002394 ORTHO05D002508 5.3e-30 134.4 88 65.9
PSO478G3218 Papaver somniferum HOM05D002394 ORTHO05D002508 5.3e-30 134.4 88 65.9
Sp7g02610 Schrenkiella parvula HOM05D002394 ORTHO05D002508 5.3e-30 134.4 92 65.2
CSS0021933 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 6.9e-30 134.0 83 69.9
Os07g0598200 Oryza sativa ssp. japonica HOM05D002394 ORTHO05D002508 2.6e-29 132.1 90 63.3
HPP92_010150 Vanilla planifolia HOM05D002394 ORTHO05D002508 3.4e-29 131.7 92 60.9
Migut.H00651 Erythranthe guttata HOM05D002394 ORTHO05D002508 5.9e-29 131.0 89 64.0
Zm00001eb108420 Zea mays HOM05D002394 ORTHO05D002508 5.9e-29 131.0 90 63.3
ATR0064G118 Amborella trichopoda HOM05D002394 ORTHO05D002508 1.3e-28 129.8 90 58.9
Os03g0427000 Oryza sativa ssp. japonica HOM05D002394 ORTHO05D002508 2.9e-28 128.6 90 61.1
Zm00001eb326680 Zea mays HOM05D002394 ORTHO05D002508 1.4e-27 126.3 90 61.1
Zm00001eb020350 Zea mays HOM05D002394 ORTHO05D002508 1.8e-25 119.4 90 57.8
HanXRQChr15g0488711 Helianthus annuus HOM05D002394 ORTHO05D002508 8.8e-25 117.1 77 66.2
SEGI_32380 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 1.1e-24 116.7 88 58.0
SalBow1G6835 Salvia bowleyana HOM05D002394 ORTHO05D002508 2.6e-24 115.5 84 64.3
SalBow1G4045 Salvia bowleyana HOM05D002394 ORTHO05D002508 4.4e-24 114.8 71 73.2
THA.LOC104805499 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 9.1e-22 107.1 94 54.3
DCAR_025410 Daucus carota HOM05D002394 ORTHO05D002508 5.9e-21 104.4 59 74.6
Sabra17G0079500 Salix brachista HOM05D002394 ORTHO05D002508 5.9e-21 104.4 59 78.0
SHI16429 Sapria himalayana HOM05D002394 ORTHO05D002508 7.2e-19 97.4 83 55.4
SEGI_33966 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 1.4e-17 93.2 70 54.3
Eucgr.I00718 Eucalyptus grandis HOM05D002394 ORTHO05D002508 2.2e-12 75.9 51 62.7
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 2.1e-10 69.3 74 41.9
SEGI_28388 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 2.7e-10 68.9 78 43.6
Pp3c4_11290 Physcomitrium patens HOM05D002394 ORTHO05D002508 8.0e-10 67.4 76 42.1
Aqoxy2G03254 Aquilegia oxysepala HOM05D002394 ORTHO05D002508 4.8e-07 58.2 73 39.7
Actinidia01968 Actinidia chinensis HOM05D002394 ORTHO05D002508 6.3e-07 57.8 35 74.3
DCAR_012457 Daucus carota HOM05D002394 ORTHO05D002508 3.1e-06 55.5 67 38.8
PSO541G6267 Papaver somniferum HOM05D002394 ORTHO05D002508 4.1e-06 55.1 55 40.0
ATR0661G424 Amborella trichopoda HOM05D002394 ORTHO05D002508 7.0e-06 54.3 93 32.3
PSO407G0148 Papaver somniferum HOM05D002394 ORTHO05D002508 7.0e-06 54.3 61 37.7


User provided reference genes

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