Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 2.2e-283 978.4 528 100.0
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 1.8e-160 570.1 480 70.2
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.8e-145 519.6 485 65.6
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 4.0e-144 515.8 484 65.5
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 4.1e-141 505.8 482 63.5
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 4.1e-141 505.8 481 63.2
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.6e-140 503.8 482 63.9
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 1.7e-139 500.4 470 64.3
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 8.6e-139 498.0 477 65.2
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.5e-138 497.3 485 64.1
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 7.3e-138 495.0 477 64.8
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.6e-137 493.8 474 63.1
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 1.8e-136 490.3 481 63.0
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.8e-136 490.3 481 62.6
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 2.4e-136 490.0 470 63.6
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 1.2e-135 487.6 478 61.9
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 8.4e-134 481.5 483 62.7
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 1.9e-133 480.3 470 62.1
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 7.1e-133 478.4 471 61.6
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 9.2e-133 478.0 471 61.8
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 9.2e-133 478.0 463 62.0
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 2.1e-132 476.9 479 62.6
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 6.0e-132 475.3 485 61.6
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 7.8e-132 474.9 492 60.4
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 3.0e-131 473.0 460 62.6
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 3.3e-130 469.5 422 63.5
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 2.1e-129 466.8 487 57.5
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 8.1e-129 464.9 488 60.5
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 1.4e-125 454.1 472 60.6
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 4.2e-125 452.6 484 57.9
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 1.6e-124 450.7 474 58.6
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 1.1e-122 444.5 491 58.2
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 5.6e-122 442.2 479 60.3
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 7.3e-122 441.8 588 51.9
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 6.9e-120 435.3 505 56.0
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 2.6e-119 433.3 493 56.6
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 2.2e-118 430.3 445 56.6
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 3.8e-118 429.5 472 57.4
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.9e-118 429.1 489 55.8
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 1.4e-117 427.6 468 57.5
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.6e-116 424.1 478 57.5
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 2.7e-116 423.3 484 54.8
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 6.0e-116 422.2 480 56.0
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 3.0e-115 419.9 484 56.4
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.1e-115 419.1 484 55.6
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 5.1e-115 419.1 484 55.6
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 5.1e-115 419.1 472 55.1
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 8.7e-115 418.3 495 56.8
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.5e-114 417.5 484 55.4
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.5e-114 417.5 490 55.7
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.5e-114 417.5 500 54.2
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.9e-114 417.2 478 57.1
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 4.3e-114 416.0 491 54.6
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 5.6e-114 415.6 512 51.6
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 7.4e-114 415.2 478 56.3
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.6e-113 414.1 489 55.0
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 2.8e-113 413.3 423 60.3
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 3.7e-113 412.9 488 54.1
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 3.7e-113 412.9 497 55.3
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.4e-112 411.0 486 55.1
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.4e-112 410.2 485 54.8
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.4e-112 410.2 504 56.7
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 9.0e-112 408.3 471 54.4
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 5.8e-111 405.6 461 56.0
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 1.3e-110 404.4 456 54.8
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 2.9e-110 403.3 478 53.3
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 3.5e-108 396.4 499 52.1
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.8e-107 394.0 449 55.9
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 3.9e-107 392.9 491 55.0
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 1.1e-106 391.3 485 52.0
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 1.6e-105 387.5 446 56.1
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 4.8e-105 386.0 491 51.7
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 9.0e-104 381.7 465 52.3
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 3.4e-103 379.8 491 52.1
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 3.4e-103 379.8 473 55.0
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 4.5e-103 379.4 481 51.1
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 4.5e-103 379.4 498 54.6
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 7.6e-103 378.6 473 53.5
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 2.2e-102 377.1 455 54.9
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 4.9e-102 375.9 494 53.6
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 8.4e-102 375.2 424 53.5
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 1.4e-101 374.4 518 50.0
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 3.2e-101 373.2 470 50.4
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 4.2e-101 372.9 341 66.0
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 9.3e-101 371.7 363 62.3
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 7.9e-100 368.6 475 52.2
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 1.3e-99 367.9 469 49.7
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 2.3e-99 367.1 505 48.1
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 5.1e-99 365.9 483 51.1
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 8.7e-99 365.2 500 50.2
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 2.5e-98 363.6 497 49.7
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 7.4e-98 362.1 596 44.8
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 1.3e-97 361.3 470 50.6
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.6e-97 360.9 381 56.7
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 6.9e-96 355.5 499 49.3
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 2.0e-95 354.0 488 49.8
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.6e-95 353.6 498 47.6
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 7.7e-95 352.1 494 50.0
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 6.5e-94 349.0 484 51.2
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 5.5e-93 345.9 516 46.7
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.7e-92 343.6 478 49.6
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 4.6e-92 342.8 469 50.3
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 2.3e-91 340.5 488 49.4
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.4e-88 331.3 464 48.3
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 9.1e-88 328.6 433 49.2
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 2.0e-87 327.4 286 68.5
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.5e-87 326.2 450 50.0
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 4.5e-87 326.2 266 71.4
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 5.9e-87 325.9 251 74.1
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 8.5e-86 322.0 485 48.2
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.5e-85 320.5 542 43.4
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 4.2e-85 319.7 471 48.4
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 7.2e-85 318.9 463 49.7
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 6.7e-83 312.4 449 48.1
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 4.4e-82 309.7 478 45.6
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 2.0e-79 300.8 399 50.1
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 4.5e-79 299.7 278 63.3
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.7e-79 298.9 450 47.1
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.3e-78 298.1 464 45.7
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 2.5e-77 293.9 388 50.3
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 2.5e-77 293.9 426 47.2
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 2.6e-74 283.9 483 43.5
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 1.2e-68 265.0 479 42.2
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 2.3e-67 260.8 429 42.7
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 6.1e-60 236.1 505 37.0
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.8e-59 234.6 416 41.6
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 6.1e-52 209.5 265 52.8
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 4.4e-50 203.4 479 35.3
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 4.3e-45 186.8 489 32.3
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.0e-43 180.3 278 43.9
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 1.3e-30 138.7 455 29.2
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 2.3e-30 137.9 113 67.3
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 4.7e-28 130.2 445 30.3
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 1.1e-27 129.0 191 49.2
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 5.2e-27 126.7 323 32.8
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.4e-24 117.9 95 69.5
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 2.4e-24 117.9 194 42.8
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 2.1e-23 114.8 176 43.8
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 1.3e-22 112.1 67 82.1
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 2.3e-22 111.3 77 71.4
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 3.9e-22 110.5 187 41.2
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.9e-21 108.2 100 58.0
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 1.1e-19 102.4 181 40.3
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 3.8e-17 94.0 194 38.1
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 7.1e-16 89.7 155 40.0
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 2.7e-15 87.8 397 24.7
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 8.7e-14 82.8 160 38.8
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 1.1e-13 82.4 172 41.9
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 1.5e-13 82.0 194 36.1
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.1e-11 75.9 259 34.7
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 5.3e-11 73.6 153 41.8
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 5.3e-11 73.6 107 42.1
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 1.2e-10 72.4 312 27.2
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 4.9e-09 67.0 72 50.0
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 3.2e-08 64.3 180 31.7
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 1.2e-07 62.4 71 49.3
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 3.9e-06 57.4 111 38.7
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 5.1e-06 57.0 81 45.7


User provided reference genes

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