Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15341 Avicennia marina HOM05D000871 ORTHO05D031632 9.6e-80 300.1 147 100.0
Nitab4.5_0000036g0190 Nicotiana tabacum HOM05D000871 ORTHO05D000770 2.3e-12 76.3 134 39.6
Nitab4.5_0003390g0020 Nicotiana tabacum HOM05D000871 ORTHO05D000770 6.6e-12 74.7 135 39.3
Thecc.01G077200 Theobroma cacao HOM05D000871 ORTHO05D000770 2.5e-11 72.8 90 46.7
Dinv23051 Davidia involucrata HOM05D000871 ORTHO05D000770 3.3e-11 72.4 90 46.7
CSS0025875 Camellia sinensis var. sinensis HOM05D000871 ORTHO05D000770 2.8e-10 69.3 94 46.8
CSS0038397 Camellia sinensis var. sinensis HOM05D000871 ORTHO05D000770 2.8e-10 69.3 94 46.8
Rhsim08G0090000 Rhododendron simsii HOM05D000871 ORTHO05D000770 6.1e-10 68.2 91 47.3
Duzib147G0138 Durio zibethinus HOM05D000871 ORTHO05D000770 1.4e-09 67.0 103 42.7
TAR381G1038 Trochodendron aralioides HOM05D000871 ORTHO05D000770 1.8e-09 66.6 86 46.5
Actinidia36418 Actinidia chinensis HOM05D000871 ORTHO05D000770 2.3e-09 66.2 90 50.0
Prupe.8G156800 Prunus persica HOM05D000871 ORTHO05D000770 3.1e-09 65.9 86 44.2
CSS0038571 Camellia sinensis var. sinensis HOM05D000871 ORTHO05D000770 4.0e-09 65.5 88 45.5
CSS0041648 Camellia sinensis var. sinensis HOM05D000871 ORTHO05D000770 4.0e-09 65.5 88 45.5
TAR376G1003 Trochodendron aralioides HOM05D000871 ORTHO05D000770 5.2e-09 65.1 86 45.3
Cfa006776 Carpinus fangiana HOM05D000871 ORTHO05D000770 8.9e-09 64.3 86 45.3
Gohir.A02G149400 Gossypium hirsutum HOM05D000871 ORTHO05D000770 8.9e-09 64.3 90 43.3
MD15G1064100 Malus domestica HOM05D000871 ORTHO05D000770 8.9e-09 64.3 88 46.6
Atru.chr3.1067 Acer truncatum HOM05D000871 ORTHO05D000770 1.2e-08 63.9 85 43.5
COL.COLO4_11622 Corchorus olitorius HOM05D000871 ORTHO05D000770 2.0e-08 63.2 90 43.3
FvH4_2g02660 Fragaria vesca HOM05D000871 ORTHO05D000770 2.0e-08 63.2 83 48.2
FAN20G0936 Fragaria x ananassa HOM05D000871 ORTHO05D000770 2.0e-08 63.2 83 48.2
Dinv09503 Davidia involucrata HOM05D000871 ORTHO05D000770 2.6e-08 62.8 86 43.0
FAN27G2424 Fragaria x ananassa HOM05D000871 ORTHO05D000770 2.6e-08 62.8 83 49.4
Oeu014215.1 Olea europaea HOM05D000871 ORTHO05D000770 2.6e-08 62.8 91 45.1
CAN.G252.12 Capsicum annuum HOM05D000871 ORTHO05D000770 5.8e-08 61.6 86 45.3
CARHR114140 Cardamine hirsuta HOM05D000871 ORTHO05D031632 5.8e-08 61.6 89 42.7
FAN24G2306 Fragaria x ananassa HOM05D000871 ORTHO05D000770 5.8e-08 61.6 109 39.4
Gorai.003G032500 Gossypium raimondii HOM05D000871 ORTHO05D000770 5.8e-08 61.6 88 40.9
Nn5g30691 Nelumbo nucifera HOM05D000871 ORTHO05D000770 5.8e-08 61.6 90 41.1
Hund16420 Selenicereus undatus HOM05D000871 ORTHO05D000770 5.8e-08 61.6 101 38.6
TWI56G0882 Tripterygium wilfordii HOM05D000871 ORTHO05D000770 5.8e-08 61.6 86 44.2
Cfa006777 Carpinus fangiana HOM05D000871 ORTHO05D000770 7.5e-08 61.2 86 48.8
Gorai.007G226900 Gossypium raimondii HOM05D000871 ORTHO05D000770 7.5e-08 61.2 87 41.4
Manes.10G088900 Manihot esculenta HOM05D000871 ORTHO05D000770 7.5e-08 61.2 86 44.2
Manes.10G089100 Manihot esculenta HOM05D000871 ORTHO05D000770 7.5e-08 61.2 86 43.0
CiPaw.08G149500 Carya illinoinensis HOM05D000871 ORTHO05D000770 9.8e-08 60.8 86 47.7
CiPaw.08G149700 Carya illinoinensis HOM05D000871 ORTHO05D000770 9.8e-08 60.8 85 45.9
Eucgr.I00669 Eucalyptus grandis HOM05D000871 ORTHO05D000770 1.3e-07 60.5 88 45.5
MSTRG.5303 Avicennia marina HOM05D000871 ORTHO05D000770 1.7e-07 60.1 86 41.9
CiPaw.08G149600 Carya illinoinensis HOM05D000871 ORTHO05D000770 2.2e-07 59.7 86 48.8
Ciclev10010419m.g Citrus clementina HOM05D000871 ORTHO05D000770 2.2e-07 59.7 86 41.9
Duzib116G0530 Durio zibethinus HOM05D000871 ORTHO05D000770 2.2e-07 59.7 89 43.8
Manes.10G090151 Manihot esculenta HOM05D000871 ORTHO05D000770 2.2e-07 59.7 88 44.3
RcHm_v2.0_Chr2g0108881 Rosa chinensis HOM05D000871 ORTHO05D000770 2.2e-07 59.7 91 46.2
RcHm_v2.0_Chr7g0177181 Rosa chinensis HOM05D000871 ORTHO05D000770 2.2e-07 59.7 83 45.8
Duzib052G0528 Durio zibethinus HOM05D000871 ORTHO05D000770 2.9e-07 59.3 86 43.0
Lsat_1_v5_gn_2_80100 Lactuca sativa HOM05D000871 ORTHO05D000770 2.9e-07 59.3 85 45.9
Manes.10G088716 Manihot esculenta HOM05D000871 ORTHO05D000770 3.7e-07 58.9 88 43.2
Manes.10G089158 Manihot esculenta HOM05D000871 ORTHO05D000770 3.7e-07 58.9 88 43.2
Gohir.D11G211201 Gossypium hirsutum HOM05D000871 ORTHO05D011596 4.9e-07 58.5 84 41.7
Manes.10G087710 Manihot esculenta HOM05D000871 ORTHO05D000770 4.9e-07 58.5 88 43.2
Manes.10G087720 Manihot esculenta HOM05D000871 ORTHO05D000770 4.9e-07 58.5 88 43.2
Manes.10G087730 Manihot esculenta HOM05D000871 ORTHO05D000770 4.9e-07 58.5 88 43.2
Manes.10G088600 Manihot esculenta HOM05D000871 ORTHO05D000770 4.9e-07 58.5 88 43.2
Manes.10G088700 Manihot esculenta HOM05D000871 ORTHO05D000770 4.9e-07 58.5 88 44.3
Manes.10G090050 Manihot esculenta HOM05D000871 ORTHO05D000770 4.9e-07 58.5 88 43.2
C04p52170 Brassica napus HOM05D000871 ORTHO05D000770 6.4e-07 58.2 89 38.2
Gohir.D03G030900 Gossypium hirsutum HOM05D000871 ORTHO05D000770 6.4e-07 58.2 88 40.9
Hma1.2p1_1230F.1_g268760 Hydrangea macrophylla HOM05D000871 ORTHO05D031632 6.4e-07 58.2 95 42.1
Oeu014316.1 Olea europaea HOM05D000871 ORTHO05D000770 6.4e-07 58.2 41 73.2
Oeu014317.1 Olea europaea HOM05D000871 ORTHO05D000770 6.4e-07 58.2 41 73.2
CiPaw.08G053100 Carya illinoinensis HOM05D000871 ORTHO05D000770 8.3e-07 57.8 87 44.8
CiPaw.08G149800 Carya illinoinensis HOM05D000871 ORTHO05D000770 8.3e-07 57.8 85 42.4
Dinv16051 Davidia involucrata HOM05D000871 ORTHO05D000770 8.3e-07 57.8 87 43.7
Manes.12G118000 Manihot esculenta HOM05D000871 ORTHO05D000770 8.3e-07 57.8 86 40.7
Manes.18G050300 Manihot esculenta HOM05D000871 ORTHO05D000770 8.3e-07 57.8 88 43.2
RcHm_v2.0_Chr6g0247001 Rosa chinensis HOM05D000871 ORTHO05D000770 8.3e-07 57.8 83 44.6
Cpa.g.sc129.68 Carica papaya HOM05D000871 ORTHO05D000770 1.1e-06 57.4 103 36.9
Potri.005G146700 Populus trichocarpa HOM05D000871 ORTHO05D000770 1.1e-06 57.4 86 45.3
Duzib041G0102 Durio zibethinus HOM05D000871 ORTHO05D000770 1.4e-06 57.0 87 41.4
HanXRQChr04g0112431 Helianthus annuus HOM05D000871 ORTHO05D000770 1.4e-06 57.0 86 46.5
MD08G1076800 Malus domestica HOM05D000871 ORTHO05D000770 1.4e-06 57.0 86 46.5
SGA_v2.0_scaffold337G49173 Striga asiatica HOM05D000871 ORTHO05D000770 1.4e-06 57.0 101 36.6
BcaB06g27845 Brassica carinata HOM05D000871 ORTHO05D000770 1.9e-06 56.6 86 39.5
GSVIVG01006926001 Vitis vinifera HOM05D000871 ORTHO05D000770 1.9e-06 56.6 86 40.7
GSVIVG01007278001 Vitis vinifera HOM05D000871 ORTHO05D000770 1.9e-06 56.6 86 40.7
CSS0005808 Camellia sinensis var. sinensis HOM05D000871 ORTHO05D000770 2.4e-06 56.2 87 44.8
Ciclev10010276m.g Citrus clementina HOM05D000871 ORTHO05D000770 2.4e-06 56.2 87 42.5
Gohir.A01G124100 Gossypium hirsutum HOM05D000871 ORTHO05D000770 2.4e-06 56.2 86 38.4
MD05G1112100 Malus domestica HOM05D000871 ORTHO05D000770 2.4e-06 56.2 82 41.5
Prupe.1G418100 Prunus persica HOM05D000871 ORTHO05D000770 2.4e-06 56.2 86 43.0
Rhsim05G0094200 Rhododendron simsii HOM05D000871 ORTHO05D000770 2.4e-06 56.2 99 37.4
Sp4g01850 Schrenkiella parvula HOM05D000871 ORTHO05D000770 2.4e-06 56.2 87 40.2
SpUn0042_0010 Schrenkiella parvula HOM05D000871 ORTHO05D000770 2.4e-06 56.2 87 40.2
Actinidia10230 Actinidia chinensis HOM05D000871 ORTHO05D000770 3.2e-06 55.8 88 40.9
A04p17420 Brassica napus HOM05D000871 ORTHO05D000770 3.2e-06 55.8 86 37.2
TWI74G0978 Tripterygium wilfordii HOM05D000871 ORTHO05D000770 3.2e-06 55.8 87 40.2
CSS0043853 Camellia sinensis var. sinensis HOM05D000871 ORTHO05D000770 4.1e-06 55.5 86 39.5
Duzib093G1756 Durio zibethinus HOM05D000871 ORTHO05D000770 4.1e-06 55.5 87 41.4
Gorai.002G136800 Gossypium raimondii HOM05D000871 ORTHO05D000770 4.1e-06 55.5 86 37.2
Lj4C751G2 Lonicera japonica HOM05D000871 ORTHO05D000770 4.1e-06 55.5 86 39.5
Lj9A340T59 Lonicera japonica HOM05D000871 ORTHO05D000770 4.1e-06 55.5 100 37.0
SalBow3G1679 Salvia bowleyana HOM05D000871 ORTHO05D000770 4.1e-06 55.5 87 44.8
TAR625G1074 Trochodendron aralioides HOM05D000871 ORTHO05D000770 4.1e-06 55.5 90 41.1
MSTRG.27778 Avicennia marina HOM05D000871 ORTHO05D000770 5.4e-06 55.1 86 40.7
CiPaw.07G171100 Carya illinoinensis HOM05D000871 ORTHO05D000770 5.4e-06 55.1 87 44.8
Haze_03981 Corylus avellana HOM05D000871 ORTHO05D000770 5.4e-06 55.1 86 40.7
Gohir.D01G111900 Gossypium hirsutum HOM05D000871 ORTHO05D000770 5.4e-06 55.1 86 37.2
Manes.05G184200 Manihot esculenta HOM05D000871 ORTHO05D000770 5.4e-06 55.1 88 37.5
Manes.10G091832 Manihot esculenta HOM05D000871 ORTHO05D000770 5.4e-06 55.1 82 41.5
Sabra05G0117100 Salix brachista HOM05D000871 ORTHO05D000770 5.4e-06 55.1 86 43.0
PGSC0003DMG400003324 Solanum tuberosum HOM05D000871 ORTHO05D000770 5.4e-06 55.1 86 45.3
Carub.0007s0249 Capsella rubella HOM05D000871 ORTHO05D000770 7.0e-06 54.7 89 39.3
MD05G1112200 Malus domestica HOM05D000871 ORTHO05D000770 7.0e-06 54.7 82 41.5
Manes.13G108200 Manihot esculenta HOM05D000871 ORTHO05D000770 7.0e-06 54.7 86 40.7
TAR628G1258 Trochodendron aralioides HOM05D000871 ORTHO05D000770 7.0e-06 54.7 86 39.5
FvH4_1g18300 Fragaria vesca HOM05D000871 ORTHO05D000770 9.2e-06 54.3 85 41.2
Thecc.08G083200 Theobroma cacao HOM05D000871 ORTHO05D000770 9.2e-06 54.3 86 39.5
unitig_62.g23634 Utricularia gibba HOM05D000871 ORTHO05D000770 9.2e-06 54.3 114 39.5


User provided reference genes

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