Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 5.2e-295 1016.9 493 100.0
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 2.6e-214 748.8 478 79.1
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 6.5e-189 664.5 505 67.5
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 8.0e-187 657.5 492 68.5
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 5.2e-186 654.8 487 66.9
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 1.5e-185 653.3 484 67.6
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.5e-185 653.3 489 66.9
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 2.6e-185 652.5 489 67.1
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 3.1e-183 645.6 493 66.3
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 4.1e-183 645.2 484 66.9
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 5.3e-183 644.8 495 65.9
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 1.6e-182 643.3 493 65.7
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.9e-182 641.3 498 66.1
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 2.5e-180 636.0 486 67.5
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 7.2e-180 634.4 492 64.6
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 9.4e-180 634.0 486 67.1
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 2.1e-179 632.9 487 65.7
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 2.7e-179 632.5 482 66.8
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 6.1e-179 631.3 490 65.3
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 1.8e-178 629.8 492 63.6
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 1.8e-178 629.8 495 64.6
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.2e-178 628.2 490 66.1
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 6.7e-178 627.9 488 66.8
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.5e-177 626.7 484 67.1
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 9.7e-177 624.0 482 66.2
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.3e-176 623.6 491 65.4
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.3e-176 623.6 492 64.2
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 1.7e-176 623.2 500 62.6
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 2.2e-176 622.9 455 68.6
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 6.3e-176 621.3 497 63.8
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 6.3e-176 621.3 478 64.4
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 1.4e-175 620.2 479 65.8
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.4e-175 620.2 496 64.7
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.8e-175 619.8 491 62.9
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.8e-175 619.8 492 62.8
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 2.4e-175 619.4 498 65.1
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 5.3e-175 618.2 488 64.5
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 9.1e-175 617.5 510 62.7
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 1.6e-174 616.7 496 64.1
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.7e-174 615.9 491 63.7
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 4.5e-174 615.1 474 65.2
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 4.5e-174 615.1 493 65.5
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 5.9e-174 614.8 494 63.6
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 2.9e-173 612.5 489 64.0
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 6.5e-173 611.3 483 63.8
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 3.2e-172 609.0 478 64.9
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 2.3e-170 602.8 510 62.7
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.0e-169 599.7 477 63.7
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 2.6e-169 599.4 473 64.5
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 5.7e-169 598.2 496 62.7
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 9.8e-169 597.4 492 61.4
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.3e-168 597.0 483 63.4
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 4.8e-168 595.1 478 62.8
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 6.3e-168 594.7 493 61.9
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 6.3e-168 594.7 475 63.8
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 5.4e-167 591.7 485 61.9
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 7.0e-167 591.3 500 62.4
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.2e-166 590.5 485 62.9
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 1.2e-166 590.5 484 61.6
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.2e-166 590.5 485 62.9
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 2.0e-166 589.7 489 61.8
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 1.1e-164 583.9 494 62.1
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 1.9e-164 583.2 484 61.4
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 2.5e-164 582.8 492 62.4
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 1.2e-163 580.5 463 63.7
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.8e-163 579.3 466 63.3
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.6e-161 572.8 488 61.3
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 4.4e-161 572.0 493 61.1
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 7.5e-161 571.2 484 61.8
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.3e-160 570.5 412 70.1
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 4.9e-160 568.5 535 56.6
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 9.2e-159 564.3 481 60.3
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 2.0e-158 563.1 504 57.5
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 4.5e-158 562.0 489 60.1
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 6.6e-157 558.1 498 59.2
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 1.9e-156 556.6 473 62.2
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 5.6e-156 555.1 475 62.1
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 5.6e-156 555.1 487 59.1
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 2.1e-155 553.1 495 58.0
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 2.8e-155 552.7 492 58.5
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.7e-152 543.5 560 51.6
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 3.2e-151 539.3 491 58.5
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.6e-150 537.0 485 59.8
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 6.0e-150 535.0 493 58.4
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 1.1e-146 524.2 469 59.5
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.2e-145 520.8 486 57.6
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 5.8e-145 518.5 504 56.3
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.2e-139 500.7 476 56.9
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.8e-138 496.9 512 54.1
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.8e-138 496.9 517 52.2
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 2.9e-136 489.6 501 54.9
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.9e-135 486.9 448 58.3
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 4.1e-135 485.7 416 61.1
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 5.4e-135 485.3 411 61.8
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 7.1e-135 485.0 489 54.4
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 2.7e-134 483.0 478 54.2
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 8.6e-133 478.0 406 62.6
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.9e-132 476.9 488 52.3
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 1.1e-130 471.1 265 81.9
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 8.9e-130 468.0 544 48.3
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 1.3e-128 464.2 845 36.6
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 3.5e-126 456.1 474 53.8
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 8.1e-123 444.9 379 62.3
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 2.2e-120 436.8 513 47.0
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 2.2e-120 436.8 511 51.5
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 1.4e-119 434.1 266 76.7
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 1.9e-116 423.7 413 56.7
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.9e-112 409.1 456 49.8
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.1e-100 371.3 434 52.3
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 2.5e-100 370.2 354 55.6
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 2.1e-99 367.1 391 53.7
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-96 355.5 626 37.4
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 8.7e-93 345.1 484 43.8
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 6.9e-90 335.5 226 67.3
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 3.8e-88 329.7 492 42.5
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 2.6e-81 307.0 356 50.0
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 3.0e-77 293.5 489 37.8
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.5e-73 280.0 191 67.0
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 5.2e-69 266.2 270 48.9
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 9.7e-68 261.9 281 47.3
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 5.3e-66 256.1 136 86.8
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 6.5e-56 222.6 129 79.8
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 1.8e-53 214.5 299 40.5
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 9.8e-52 208.8 394 38.1
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.1e-50 205.3 315 37.5
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 7.0e-50 202.6 113 81.4
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.1e-42 178.7 106 77.4
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 3.5e-33 147.1 86 77.9
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 3.6e-22 110.5 76 69.7
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 5.2e-21 106.7 60 76.7
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 4.9e-19 100.1 81 60.5
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 9.6e-15 85.9 56 75.0
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 3.1e-13 80.9 41 85.4
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 1.5e-12 78.6 68 47.1
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 9.9e-12 75.9 70 48.6
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 1.0e-08 65.9 94 41.5
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 3.0e-08 64.3 72 50.0
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 3.9e-08 63.9 49 61.2
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 6.6e-08 63.2 45 66.7


User provided reference genes

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