Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 1.1e-116 423.3 221 100.0
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 2.2e-64 249.6 204 70.1
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 6.1e-46 188.3 211 57.3
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.8e-45 186.8 226 56.2
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 7.7e-41 171.4 216 51.4
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 1.0e-40 171.0 215 54.9
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.9e-39 166.8 208 55.8
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 4.7e-38 162.2 212 48.6
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 3.4e-36 156.0 189 51.9
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 4.9e-35 152.1 215 47.0
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 2.4e-34 149.8 203 49.8
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.4e-34 148.7 197 47.7
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 7.0e-34 148.3 213 51.2
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 9.2e-34 147.9 217 47.9
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.2e-33 147.5 203 48.8
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.2e-33 147.5 191 52.4
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.6e-33 147.1 205 48.3
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.6e-33 147.1 158 52.5
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.7e-33 146.4 198 48.5
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 4.6e-33 145.6 195 50.8
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.0e-32 144.4 195 48.7
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.0e-32 144.4 199 47.7
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 1.7e-32 143.7 199 47.2
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 1.7e-32 143.7 211 46.0
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 2.3e-32 143.3 183 49.2
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 2.3e-32 143.3 213 46.0
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 3.0e-32 142.9 187 48.7
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 5.0e-32 142.1 208 50.5
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 6.6e-32 141.7 206 46.1
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.1e-31 141.0 171 55.0
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 4.3e-31 139.0 188 48.4
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 4.3e-31 139.0 195 48.2
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.2e-30 137.5 188 47.3
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.6e-30 137.1 148 50.7
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.6e-30 137.1 205 43.4
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.8e-30 136.3 174 48.3
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 3.6e-30 136.0 188 48.9
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 3.6e-30 136.0 168 51.8
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 8.0e-30 134.8 189 49.7
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.8e-29 133.7 182 48.4
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 1.8e-29 133.7 190 44.7
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 2.3e-29 133.3 164 50.6
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 3.1e-29 132.9 176 48.3
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 3.1e-29 132.9 194 50.5
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 4.0e-29 132.5 168 51.8
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.0e-29 132.5 182 48.4
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 4.0e-29 132.5 190 47.4
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 5.2e-29 132.1 135 56.3
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 6.8e-29 131.7 190 45.8
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 1.2e-28 131.0 200 47.5
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 5.8e-28 128.6 200 48.0
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 7.5e-28 128.3 182 48.4
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 7.5e-28 128.3 175 49.7
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 9.8e-28 127.9 169 52.7
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.7e-27 127.1 157 44.6
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 4.9e-27 125.6 176 44.3
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 4.9e-27 125.6 190 46.8
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 6.4e-27 125.2 136 52.2
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 8.3e-27 124.8 181 49.2
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 1.4e-26 124.0 188 43.6
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 2.4e-26 123.2 230 42.6
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 5.4e-26 122.1 171 52.0
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 5.4e-26 122.1 171 46.2
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 2.7e-25 119.8 177 46.9
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 3.5e-25 119.4 200 43.5
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 1.0e-24 117.9 188 42.6
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 1.3e-24 117.5 179 43.6
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.3e-24 116.7 191 41.9
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 3.9e-24 115.9 180 42.2
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 5.0e-24 115.5 158 46.2
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.5e-23 114.0 175 42.9
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 1.9e-23 113.6 161 44.7
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.5e-23 113.2 182 41.2
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 3.3e-23 112.8 192 42.2
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 4.3e-23 112.5 216 40.7
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 7.3e-23 111.7 171 42.7
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 9.5e-23 111.3 184 42.9
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 9.5e-23 111.3 164 48.8
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 9.5e-23 111.3 185 41.1
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.2e-22 110.9 174 43.7
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 1.2e-22 110.9 140 47.1
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.6e-22 110.5 204 41.2
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 2.8e-22 109.8 200 41.0
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 4.7e-22 109.0 169 43.2
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 8.1e-22 108.2 205 42.4
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 3.1e-21 106.3 166 44.6
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.1e-21 106.3 209 43.1
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 4.0e-21 105.9 204 37.7
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 4.0e-21 105.9 204 37.7
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 4.0e-21 105.9 171 41.5
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 6.8e-21 105.1 193 37.8
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 8.9e-21 104.8 156 42.3
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 8.9e-21 104.8 158 41.8
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 8.9e-21 104.8 156 49.4
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 8.9e-21 104.8 146 52.1
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 1.2e-20 104.4 180 43.9
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 1.2e-20 104.4 180 43.9
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.2e-20 104.4 211 38.4
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 1.2e-20 104.4 202 40.6
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 1.5e-20 104.0 212 37.3
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 2.0e-20 103.6 182 44.5
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 2.6e-20 103.2 209 36.4
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 3.4e-20 102.8 170 40.0
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 4.4e-20 102.4 207 36.2
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 4.4e-20 102.4 207 36.2
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 4.4e-20 102.4 161 44.1
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 5.8e-20 102.1 197 38.1
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.7e-19 100.5 182 42.3
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 1.7e-19 100.5 158 41.1
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 3.7e-19 99.4 185 41.6
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 6.4e-19 98.6 191 40.3
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.4e-18 96.7 173 41.0
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.2e-18 96.3 173 45.7
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 4.1e-18 95.9 184 37.5
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 4.1e-18 95.9 184 37.5
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 5.4e-18 95.5 172 39.0
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 9.2e-18 94.7 154 43.5
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 9.2e-18 94.7 172 41.9
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.2e-17 94.4 190 40.5
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 2.7e-17 93.2 161 37.3
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 2.7e-17 93.2 149 45.0
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 2.7e-17 93.2 195 35.4
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.5e-17 92.8 181 42.5
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 4.6e-17 92.4 176 36.9
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 6.0e-17 92.0 158 37.3
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 1.0e-16 91.3 168 45.8
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.0e-16 91.3 197 35.5
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 5.1e-16 89.0 181 39.2
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 1.6e-14 84.0 189 38.6
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 4.7e-14 82.4 196 39.3
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 8.1e-14 81.6 146 37.0
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 6.8e-13 78.6 186 37.6
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.5e-12 77.4 164 37.8
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 4.4e-12 75.9 168 36.3
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.7e-11 73.9 130 40.8
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.7e-11 73.9 211 32.2
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 2.9e-11 73.2 125 41.6
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 1.4e-10 70.9 204 34.3
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.6e-09 67.4 106 46.2
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 4.6e-09 65.9 124 43.5
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 6.0e-09 65.5 200 32.5
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 1.7e-08 63.9 138 33.3
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 4.7e-06 55.8 178 32.0
TAR381G1423 Trochodendron aralioides HOM05D005065 ORTHO05D005944 8.1e-06 55.1 57 49.1


User provided reference genes

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