Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 0.0e+00 1324.3 684 100.0
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 1.0e-216 757.3 729 62.4
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 5.5e-162 575.5 718 52.4
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.2e-161 574.3 731 53.1
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 6.3e-150 535.4 756 50.4
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 2.5e-146 523.5 765 48.8
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.2e-140 504.6 726 47.7
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.0e-139 501.5 721 48.0
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 6.6e-139 498.8 725 48.1
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.8e-133 480.7 710 47.2
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 5.9e-132 475.7 705 46.8
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 1.9e-130 470.7 700 48.1
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 9.5e-130 468.4 721 46.7
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 4.3e-122 443.0 817 41.1
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 5.4e-117 426.0 732 42.8
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 5.6e-114 416.0 740 41.9
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 2.1e-113 414.1 696 42.1
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.8e-112 411.0 707 44.4
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 2.3e-112 410.6 744 44.0
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 4.4e-111 406.4 748 42.6
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 5.8e-111 406.0 736 43.2
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 4.9e-110 402.9 717 43.5
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 9.2e-109 398.7 755 40.9
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 1.0e-107 395.2 719 41.3
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 1.7e-107 394.4 704 42.5
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 1.1e-106 391.7 691 43.8
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 1.1e-106 391.7 737 40.6
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.2e-105 388.3 709 42.7
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 2.8e-105 387.1 734 43.3
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 3.6e-105 386.7 773 38.3
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 3.6e-105 386.7 748 40.9
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 6.2e-105 386.0 718 43.9
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.1e-104 385.2 761 40.2
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 4.0e-104 383.3 740 41.6
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 5.8e-103 379.4 747 39.9
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 9.9e-103 378.6 754 39.8
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.3e-102 378.3 720 43.3
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 2.9e-102 377.1 718 43.5
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 6.0e-100 369.4 733 40.4
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.3e-99 368.2 660 43.8
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 1.1e-98 365.2 748 41.7
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 9.6e-98 362.1 728 40.8
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 2.8e-97 360.5 736 40.4
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 2.8e-97 360.5 713 42.1
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 6.2e-97 359.4 731 40.4
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 6.2e-97 359.4 740 40.1
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 8.1e-97 359.0 725 41.5
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.8e-96 357.8 735 40.5
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.8e-96 357.8 725 40.4
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 3.1e-96 357.1 713 39.0
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 5.3e-96 356.3 704 39.8
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 9.0e-96 355.5 613 43.2
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.5e-95 354.8 723 41.5
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.9e-94 350.5 722 40.3
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 8.4e-94 349.0 734 39.8
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 1.4e-93 348.2 767 39.1
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 2.4e-93 347.4 719 40.1
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 7.1e-93 345.9 728 38.3
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.6e-92 344.7 687 39.2
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 6.0e-92 342.8 711 39.9
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 2.5e-90 337.4 732 38.9
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 3.3e-90 337.0 730 38.9
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 5.6e-90 336.3 705 39.7
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.6e-89 334.7 722 38.9
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.1e-89 334.3 724 37.7
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 6.9e-88 329.3 767 37.0
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 1.5e-87 328.2 758 36.4
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 2.0e-87 327.8 728 39.7
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 2.6e-87 327.4 739 38.8
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 1.3e-86 325.1 715 40.0
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.7e-86 324.7 725 38.5
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 3.8e-86 323.6 703 37.7
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 6.4e-86 322.8 694 39.0
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.4e-86 322.8 725 37.2
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.6e-84 318.2 723 37.1
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 2.1e-84 317.8 734 38.0
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 2.3e-83 314.3 703 38.0
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 3.9e-83 313.5 711 39.4
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 4.3e-82 310.1 708 38.7
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.6e-81 308.1 707 36.9
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 2.8e-81 307.4 725 36.6
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 2.8e-81 307.4 712 38.9
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.1e-80 303.9 725 37.2
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 4.0e-80 303.5 699 38.8
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 3.4e-79 300.4 691 36.8
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.0e-78 298.9 682 37.5
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.7e-78 298.1 731 37.6
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 2.5e-77 294.3 735 37.3
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 4.2e-77 293.5 706 35.7
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 9.3e-77 292.4 720 37.1
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.6e-76 290.0 671 37.4
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 3.0e-75 287.3 768 33.1
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.5e-74 285.0 584 38.5
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 2.5e-74 284.3 730 38.1
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 2.1e-73 281.2 732 34.7
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 2.1e-73 281.2 711 34.9
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 3.7e-73 280.4 667 37.9
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.1e-72 278.9 739 34.9
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.2e-71 275.4 744 34.4
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 2.0e-71 274.6 793 32.9
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.6e-71 274.2 701 34.7
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 5.0e-70 270.0 730 33.4
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 2.5e-69 267.7 728 34.2
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 2.1e-68 264.6 705 35.7
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 4.6e-68 263.5 714 35.3
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 7.9e-68 262.7 756 32.9
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 1.3e-67 261.9 736 33.7
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 5.1e-67 260.0 723 36.5
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.3e-65 255.4 747 36.0
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 5.3e-64 250.0 752 34.3
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 1.2e-63 248.8 690 33.0
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 2.0e-63 248.1 685 34.6
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.3e-62 245.4 652 34.8
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 1.0e-59 235.7 686 34.8
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 9.1e-56 222.6 667 33.1
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 2.9e-54 217.6 710 30.4
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 3.8e-54 217.2 714 31.8
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 6.5e-54 216.5 759 31.4
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 5.5e-53 213.4 615 33.7
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.4e-51 208.8 713 32.7
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.1e-50 205.7 707 31.5
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 2.2e-49 201.4 674 31.0
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 6.3e-49 199.9 699 32.6
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.8e-48 198.4 662 31.3
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.9e-46 191.0 253 51.8
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 5.5e-45 186.8 815 29.8
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 6.1e-44 183.3 659 29.7
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 6.1e-44 183.3 731 29.1
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 5.2e-43 180.3 830 29.2
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 6.7e-43 179.9 658 30.4
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.2e-42 179.1 657 30.1
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 8.2e-41 172.9 569 30.9
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 1.1e-40 172.6 692 29.9
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 7.0e-40 169.9 709 29.2
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 7.0e-40 169.9 709 29.2
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 7.0e-40 169.9 720 29.2
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 9.1e-40 169.5 713 29.0
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.6e-39 168.7 804 28.0
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.0e-39 168.3 540 30.9
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 3.5e-39 167.5 831 29.0
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 5.9e-39 166.8 718 29.2
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 1.3e-38 165.6 669 30.2
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 1.7e-38 165.2 680 30.3
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 5.0e-38 163.7 670 30.1
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 4.7e-36 157.1 730 29.0
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 7.5e-34 149.8 692 26.7
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 2.8e-33 147.9 218 46.8
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 2.4e-32 144.8 278 40.3
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.2e-31 142.5 343 35.6
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.3e-30 138.3 296 39.5
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.9e-29 135.2 219 42.5
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 9.5e-29 132.9 462 33.3
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 5.7e-26 123.6 312 37.2
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 7.5e-26 123.2 445 31.2
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 9.8e-26 122.9 257 37.7
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.4e-24 119.0 166 47.0
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 1.4e-24 119.0 165 46.7
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 3.1e-24 117.9 132 50.8
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 5.9e-23 113.6 494 30.0
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 5.0e-22 110.5 146 48.6
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 6.8e-19 100.1 103 63.1
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.7e-17 95.5 129 45.0
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.9e-17 94.7 85 64.7
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 7.8e-15 86.7 168 36.3
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.3e-14 85.1 680 24.9
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.8e-11 75.5 426 26.8
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 2.0e-07 62.0 70 51.4
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.0e-07 62.0 318 26.7
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.0e-06 59.7 272 23.2


User provided reference genes

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