Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 3.1e-215 751.5 379 100.0
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 1.4e-146 523.5 351 76.1
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 2.3e-141 506.1 346 72.5
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 3.3e-132 475.7 367 68.7
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 3.6e-131 472.2 350 70.3
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 6.9e-130 468.0 346 69.1
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 2.0e-129 466.5 350 68.6
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 9.9e-129 464.2 349 69.3
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 1.7e-128 463.4 349 69.3
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 8.4e-128 461.1 351 68.4
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 1.3e-125 453.8 345 68.4
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 5.1e-125 451.8 358 65.1
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 8.7e-125 451.1 353 66.6
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 8.7e-125 451.1 350 66.6
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 1.9e-124 449.9 351 68.1
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 1.9e-124 449.9 348 65.8
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 5.6e-124 448.4 344 66.9
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 7.4e-124 448.0 350 66.9
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 1.6e-123 446.8 341 66.3
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 1.6e-123 446.8 344 66.9
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 2.8e-123 446.0 345 67.0
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 4.8e-123 445.3 348 64.9
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 6.2e-123 444.9 313 70.6
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 4.0e-122 442.2 352 63.9
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 9.0e-122 441.0 352 63.4
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 1.2e-121 440.7 345 66.1
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-121 440.3 341 65.4
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 1.5e-121 440.3 318 70.4
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 3.4e-121 439.1 335 68.4
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 4.5e-121 438.7 341 67.7
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 5.8e-121 438.3 339 66.7
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.3e-120 437.2 341 67.4
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 1.7e-120 436.8 335 68.4
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 2.2e-120 436.4 341 66.6
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 2.2e-120 436.4 374 60.7
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 2.9e-120 436.0 351 64.4
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 6.4e-120 434.9 306 70.9
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 1.9e-119 433.3 340 66.2
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 1.9e-119 433.3 340 66.2
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 2.4e-119 433.0 340 66.2
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.4e-119 433.0 357 64.1
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 3.2e-119 432.6 340 65.9
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 9.3e-119 431.0 349 63.6
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 9.3e-119 431.0 340 66.8
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 1.6e-118 430.3 354 65.5
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 2.1e-118 429.9 335 66.9
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 7.9e-118 427.9 341 65.4
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 1.0e-117 427.6 333 66.7
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 1.3e-117 427.2 335 65.4
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 1.3e-117 427.2 340 65.6
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 2.3e-117 426.4 339 65.8
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 3.9e-117 425.6 376 61.7
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 3.9e-117 425.6 333 66.4
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.1e-116 424.1 331 63.7
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 1.6e-115 420.2 340 65.6
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 2.1e-115 419.9 328 66.8
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 2.1e-115 419.9 344 63.4
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 4.8e-115 418.7 341 63.3
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 4.8e-115 418.7 384 59.9
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 4.8e-115 418.7 340 64.4
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 8.2e-115 417.9 357 63.6
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 1.8e-114 416.8 338 66.6
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 5.3e-114 415.2 338 63.9
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 9.0e-114 414.5 352 62.5
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 9.0e-114 414.5 344 63.4
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 1.2e-113 414.1 352 61.6
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 2.9e-112 409.5 338 63.3
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 3.8e-112 409.1 351 59.8
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 3.8e-112 409.1 351 62.7
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 6.5e-112 408.3 349 58.2
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 1.4e-111 407.1 351 63.0
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 1.9e-111 406.8 344 63.1
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 5.5e-111 405.2 356 56.7
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 7.1e-111 404.8 299 66.6
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 1.2e-110 404.1 304 65.8
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 2.1e-110 403.3 319 64.6
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 3.9e-109 399.1 344 62.8
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 2.8e-107 392.9 360 59.2
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 8.2e-107 391.3 344 61.0
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 3.4e-105 386.0 325 61.2
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.9e-104 382.9 307 65.5
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.9e-103 380.2 346 61.6
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 7.9e-102 374.8 345 60.3
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 3.0e-101 372.9 232 79.7
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 3.3e-100 369.4 328 59.8
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 2.9e-96 356.3 351 55.6
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 6.1e-94 348.6 264 65.2
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 3.9e-93 345.9 285 66.0
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 1.1e-92 344.4 340 56.5
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 1.7e-91 340.5 413 47.9
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 1.1e-90 337.8 352 55.7
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 7.7e-89 331.6 282 64.9
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 5.5e-87 325.5 252 69.8
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 1.0e-85 321.2 263 62.7
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 3.3e-84 316.2 234 69.2
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 3.1e-82 309.7 398 47.0
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 7.7e-81 305.1 231 67.5
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 2.9e-80 303.1 343 53.4
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 1.2e-76 291.2 288 56.6
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 7.0e-74 282.0 332 48.8
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 6.1e-70 268.9 344 44.2
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 2.3e-69 266.9 177 73.4
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 1.6e-65 254.2 346 42.8
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 4.9e-59 232.6 276 47.8
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 5.4e-58 229.2 186 63.4
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 1.0e-56 224.9 256 50.0
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 7.3e-55 218.8 193 61.7
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 1.2e-54 218.0 328 40.2
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 1.7e-48 197.6 263 46.8
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 1.0e-40 171.8 100 82.0
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 4.4e-28 129.8 104 61.5
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 1.1e-26 125.2 73 78.1
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 5.1e-24 116.3 87 64.4
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 1.9e-23 114.4 120 52.5
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 2.5e-23 114.0 287 32.1
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 3.3e-23 113.6 87 64.4
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 2.6e-20 104.0 272 31.2
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.7e-19 101.3 60 76.7
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 4.8e-14 83.2 77 54.5
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 3.1e-13 80.5 198 31.8
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 7.6e-12 75.9 54 66.7
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 7.6e-12 75.9 54 66.7
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 5.1e-08 63.2 175 30.3
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 3.3e-07 60.5 167 27.5
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 4.3e-07 60.1 161 29.2
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 7.4e-07 59.3 36 72.2
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 9.6e-07 58.9 150 26.7
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 9.6e-07 58.9 153 26.1
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 1.3e-06 58.5 163 29.4
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.1e-06 57.8 167 27.5
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.1e-06 57.8 167 27.5
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 2.1e-06 57.8 137 30.7
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 2.1e-06 57.8 161 28.0
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 8.1e-06 55.8 126 27.8
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 8.1e-06 55.8 163 26.4
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 8.1e-06 55.8 137 29.9
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 8.1e-06 55.8 161 28.0
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 8.1e-06 55.8 163 27.6
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 8.1e-06 55.8 218 25.7


User provided reference genes

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