Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 0.0e+00 1154.0 578 100.0
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 8.5e-257 890.2 576 80.0
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.7e-255 885.2 566 77.4
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.3e-254 882.1 565 77.2
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 7.5e-253 877.1 570 77.7
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 6.3e-252 874.0 571 76.2
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 8.3e-252 873.6 565 76.3
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 5.4e-251 870.9 563 76.0
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 9.2e-251 870.2 565 76.3
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 2.0e-250 869.0 571 75.1
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 3.5e-250 868.2 564 76.6
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 2.3e-249 865.5 565 75.9
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 3.3e-248 861.7 568 75.5
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 2.8e-247 858.6 572 75.2
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 4.7e-247 857.8 571 74.8
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 8.9e-246 853.6 568 74.5
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 1.7e-244 849.4 566 74.4
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 6.4e-244 847.4 570 73.7
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 2.0e-242 842.4 571 73.7
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 4.6e-242 841.3 567 74.1
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 1.1e-240 836.6 571 72.5
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 2.5e-240 835.5 571 72.5
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 2.5e-240 835.5 571 72.3
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 3.3e-240 835.1 573 72.1
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 7.3e-240 833.9 572 72.4
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 7.3e-240 833.9 571 72.5
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.8e-239 832.0 572 72.2
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.8e-239 832.0 572 72.2
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 3.6e-239 831.6 571 72.5
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 8.0e-239 830.5 571 71.8
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.0e-238 830.1 564 72.9
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 2.3e-238 828.9 568 72.4
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 5.2e-238 827.8 571 71.5
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.0e-237 825.9 571 71.6
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 9.8e-237 823.5 570 71.9
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 1.1e-235 820.1 565 71.0
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 4.1e-235 818.1 567 72.5
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 1.2e-234 816.6 565 71.2
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.5e-234 815.1 571 71.6
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 4.6e-234 814.7 571 69.7
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 1.3e-233 813.1 568 69.9
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.7e-233 812.8 568 72.0
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 3.9e-233 811.6 565 71.3
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 1.9e-232 809.3 565 71.3
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 1.9e-232 809.3 565 71.3
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 2.1e-231 805.8 560 71.1
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 3.6e-231 805.1 566 70.7
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 1.5e-229 799.7 571 69.4
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 2.0e-229 799.3 568 70.4
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 5.8e-229 797.7 565 70.3
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 9.8e-229 797.0 602 66.8
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 2.4e-227 792.3 571 69.2
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 5.4e-227 791.2 565 68.7
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 2.1e-226 789.3 564 68.4
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 2.7e-226 788.9 554 70.0
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 6.0e-226 787.7 588 68.4
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 1.7e-225 786.2 567 70.4
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 2.3e-225 785.8 566 67.8
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 6.6e-225 784.3 563 69.4
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 6.6e-225 784.3 574 68.6
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 6.6e-225 784.3 557 70.2
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 1.9e-224 782.7 565 68.3
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.9e-224 782.7 567 69.5
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 2.5e-224 782.3 565 67.6
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 3.6e-223 778.5 594 66.2
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 2.3e-222 775.8 565 68.3
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 2.0e-221 772.7 566 67.5
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 2.0e-221 772.7 569 67.5
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 9.9e-221 770.4 615 64.7
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 2.9e-220 768.8 565 66.4
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 3.8e-220 768.5 565 66.4
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 8.4e-220 767.3 567 66.3
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 8.4e-220 767.3 565 66.4
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 1.1e-219 766.9 565 66.5
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 1.4e-219 766.5 565 66.4
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 4.3e-216 755.0 571 67.3
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 6.2e-215 751.1 565 66.5
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.5e-213 746.5 571 66.7
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 5.6e-208 728.0 563 66.1
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 3.2e-203 712.2 633 58.9
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 7.9e-202 707.6 570 63.2
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 1.1e-198 697.2 469 73.1
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 9.9e-197 690.6 567 63.0
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 6.4e-196 688.0 472 71.0
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 6.0e-186 654.8 468 69.2
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 2.6e-181 639.4 414 75.1
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 6.1e-178 628.2 616 56.0
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.3e-175 620.5 602 54.5
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.3e-175 620.5 602 54.5
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 1.6e-175 620.2 412 74.3
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.6e-175 620.2 421 73.2
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 2.8e-175 619.4 410 76.1
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 7.4e-168 594.7 408 70.8
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 8.8e-161 571.2 414 69.1
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 1.2e-157 560.8 418 65.6
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.0e-156 557.8 416 66.6
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 3.8e-156 555.8 408 67.6
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 3.6e-146 522.7 567 51.3
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 6.8e-145 518.5 542 50.2
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 6.8e-137 491.9 315 75.9
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.2e-125 454.5 316 70.9
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.6e-122 444.1 564 45.6
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 2.6e-120 436.8 307 70.4
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 2.2e-111 407.1 665 38.0
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 2.8e-106 390.2 237 81.0
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.9e-86 324.3 195 81.0
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 4.8e-74 283.1 569 35.5
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 6.9e-73 279.3 159 86.2
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.5e-67 261.5 420 38.6
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 1.1e-57 228.8 133 82.7
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 3.4e-56 223.8 158 69.0
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 4.5e-56 223.4 130 81.5
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 3.8e-55 220.3 140 73.6
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 2.3e-44 184.5 102 84.3
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 1.3e-39 168.7 142 64.1
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 1.3e-34 152.1 102 73.5
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 3.4e-27 127.5 67 86.6
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 2.8e-26 124.4 140 52.1
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.7e-16 91.3 54 75.9
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 1.2e-11 75.9 174 32.2
Cre16.g653258 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 8.6e-07 59.7 124 30.6
Lj2A1172G32 Lonicera japonica HOM05D002203 ORTHO05D002647 1.1e-06 59.3 166 28.9
Cre04.g212100 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 4.3e-06 57.4 135 31.1
Hund12162 Selenicereus undatus HOM05D002203 ORTHO05D002647 9.5e-06 56.2 267 24.0


User provided reference genes

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