Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 5.3e-179 630.9 330 100.0
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 6.0e-98 361.7 330 61.2
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 2.5e-96 356.3 331 63.1
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.3e-96 355.5 341 59.8
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.3e-96 355.5 341 59.8
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 7.4e-96 354.8 332 63.0
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 8.2e-95 351.3 330 60.0
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 1.4e-94 350.5 330 63.0
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 5.3e-94 348.6 344 63.1
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.3e-94 348.6 332 61.7
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 5.0e-92 342.0 330 61.2
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 1.2e-90 337.4 331 59.5
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 4.6e-90 335.5 331 62.5
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.5e-88 329.7 330 58.2
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 2.8e-87 326.2 334 58.7
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 3.7e-87 325.9 331 60.1
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.7e-84 317.0 331 58.6
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.7e-84 317.0 331 58.6
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.9e-84 316.2 331 58.3
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.2e-82 310.8 330 56.7
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 2.1e-82 310.1 333 57.1
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 6.7e-81 305.1 330 54.5
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 8.2e-79 298.1 320 58.4
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 1.8e-78 297.0 334 52.7
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 9.1e-78 294.7 331 54.4
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 6.5e-76 288.5 323 53.9
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.4e-75 287.3 312 55.4
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.4e-75 287.3 325 53.5
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.5e-75 286.6 310 55.2
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.6e-74 283.9 332 54.5
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 1.0e-73 281.2 310 55.2
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.3e-73 280.0 332 53.9
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 6.7e-73 278.5 328 53.4
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 1.7e-71 273.9 309 55.3
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 1.7e-71 273.9 307 51.5
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 8.2e-71 271.6 312 52.9
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 5.3e-70 268.9 307 55.4
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 1.2e-69 267.7 330 50.6
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 1.2e-69 267.7 310 53.5
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 2.0e-69 266.9 327 51.7
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 1.0e-68 264.6 313 52.1
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 5.0e-68 262.3 313 51.8
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 8.5e-68 261.5 313 51.8
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 8.5e-68 261.5 318 50.9
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 1.5e-67 260.8 330 50.0
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 2.5e-67 260.0 312 50.6
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 7.2e-67 258.5 319 51.4
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 6.1e-66 255.4 313 51.1
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 6.1e-66 255.4 324 51.2
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.0e-65 254.6 305 50.8
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.3e-65 253.4 308 50.6
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 6.7e-65 251.9 311 51.4
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 5.7e-64 248.8 302 49.7
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 2.8e-63 246.5 266 57.5
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.8e-63 246.5 310 48.7
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 3.7e-63 246.1 312 49.7
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 1.1e-62 244.6 309 49.5
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 3.1e-62 243.0 302 52.0
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 2.0e-61 240.4 315 48.3
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 2.6e-61 240.0 321 48.6
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 4.5e-61 239.2 305 49.2
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 5.9e-61 238.8 335 46.0
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 7.7e-61 238.4 321 48.3
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 2.5e-59 233.4 309 47.9
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 4.2e-59 232.6 320 46.9
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 1.6e-58 230.7 257 54.1
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.6e-58 230.7 308 49.4
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 2.1e-58 230.3 309 47.9
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 2.7e-58 229.9 318 46.2
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 6.1e-58 228.8 309 47.2
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 6.1e-58 228.8 308 48.1
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 8.0e-58 228.4 309 48.9
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 8.0e-58 228.4 308 48.1
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 1.0e-57 228.0 311 47.9
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.8e-57 227.3 316 45.9
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 2.3e-57 226.9 316 46.5
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 3.0e-57 226.5 310 45.8
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 8.8e-57 224.9 310 47.1
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 1.2e-56 224.6 316 47.8
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 1.2e-56 224.6 312 48.1
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 1.2e-56 224.6 293 47.4
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.2e-56 224.6 304 46.4
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 1.5e-56 224.2 305 48.9
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 2.0e-56 223.8 306 46.7
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 2.6e-56 223.4 309 45.3
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 3.4e-56 223.0 320 45.9
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 5.7e-56 222.2 301 45.5
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 9.8e-56 221.5 316 44.9
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.2e-55 220.3 301 49.2
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 2.8e-55 219.9 306 46.4
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 2.8e-55 219.9 306 46.4
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 2.8e-55 219.9 302 46.4
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 4.8e-55 219.2 318 45.3
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 6.3e-55 218.8 297 49.2
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 4.1e-54 216.1 318 45.9
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 7.0e-54 215.3 308 45.8
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 1.6e-53 214.2 308 43.8
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 2.7e-53 213.4 318 45.6
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 4.5e-53 212.6 312 43.6
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 1.7e-52 210.7 319 45.1
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 1.7e-52 210.7 287 50.2
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 2.2e-52 210.3 310 42.6
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 3.8e-52 209.5 316 42.7
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 5.0e-52 209.1 301 43.2
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 5.0e-52 209.1 263 49.8
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.9e-51 207.2 307 46.6
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 4.2e-51 206.1 301 45.5
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 7.2e-51 205.3 315 46.7
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 2.1e-50 203.8 301 43.2
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 8.8e-49 198.4 271 48.3
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 2.6e-48 196.8 285 44.9
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 7.5e-48 195.3 318 44.7
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.4e-46 191.0 289 42.9
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 1.4e-46 191.0 203 57.1
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 1.3e-44 184.5 278 41.4
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 5.0e-44 182.6 313 43.5
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 6.6e-44 182.2 310 43.9
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 4.9e-39 166.0 288 38.2
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 8.3e-39 165.2 288 37.8
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.6e-37 161.0 148 62.2
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 3.0e-28 130.2 293 37.5
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 8.6e-28 128.6 249 39.0
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 3.6e-26 123.2 171 48.0
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 6.8e-25 119.0 182 45.6
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 3.4e-24 116.7 122 58.2
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 1.4e-14 84.7 133 48.1
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 5.4e-14 82.8 246 31.3
Actinidia26538 Actinidia chinensis HOM05D006030 ORTHO05D007475 2.3e-12 77.4 97 47.4
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 4.7e-10 69.7 120 38.3
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.1e-06 58.5 63 55.6


User provided reference genes

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