Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1477 Avicennia marina HOM05D003496 ORTHO05D003909 8.2e-49 196.8 105 100.0
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 1.9e-37 159.1 105 81.0
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 1.0e-35 153.3 104 78.8
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 8.8e-35 150.2 115 73.9
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 5.7e-34 147.5 104 75.0
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 3.7e-33 144.8 103 75.7
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 3.7e-33 144.8 104 74.0
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 6.3e-33 144.1 104 73.1
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 6.3e-33 144.1 104 73.1
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.1e-32 143.3 104 72.1
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.4e-32 142.9 104 71.2
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.4e-32 142.9 104 75.0
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 4.1e-32 141.4 105 71.4
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 4.1e-32 141.4 104 72.1
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 5.3e-32 141.0 103 73.8
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 9.1e-32 140.2 104 73.1
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 3.5e-31 138.3 104 72.1
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 5.9e-31 137.5 101 73.3
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 7.7e-31 137.1 96 77.1
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 1.0e-30 136.7 103 71.8
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 1.3e-30 136.3 104 68.3
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 1.3e-30 136.3 102 71.6
CAN.G1227.18 Capsicum annuum HOM05D003496 ORTHO05D003909 2.9e-30 135.2 104 70.2
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.8e-30 134.8 103 71.8
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 3.8e-30 134.8 103 70.9
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 5.0e-30 134.4 103 72.8
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 5.0e-30 134.4 104 70.2
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 5.0e-30 134.4 102 73.5
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 5.0e-30 134.4 102 73.5
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 6.5e-30 134.0 103 70.9
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 6.5e-30 134.0 103 71.8
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.5e-30 134.0 103 71.8
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.5e-30 134.0 103 71.8
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 6.5e-30 134.0 102 73.5
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 8.5e-30 133.7 103 71.8
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 8.5e-30 133.7 103 71.8
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 8.5e-30 133.7 103 71.8
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 1.1e-29 133.3 102 71.6
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 1.1e-29 133.3 102 70.6
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 1.5e-29 132.9 102 70.6
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 1.5e-29 132.9 102 73.5
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.9e-29 132.5 103 70.9
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 1.9e-29 132.5 102 69.6
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 1.9e-29 132.5 118 63.6
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.5e-29 132.1 102 71.6
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 2.5e-29 132.1 102 70.6
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 3.2e-29 131.7 103 71.8
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 4.2e-29 131.3 103 70.9
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 4.2e-29 131.3 102 72.5
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.5e-29 131.0 103 69.9
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 7.2e-29 130.6 103 70.9
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.2e-28 129.8 102 71.6
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 2.1e-28 129.0 101 67.3
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 2.1e-28 129.0 102 70.6
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 2.7e-28 128.6 102 70.6
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 3.6e-28 128.3 102 69.6
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 4.7e-28 127.9 102 68.6
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 4.7e-28 127.9 102 69.6
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 6.1e-28 127.5 102 69.6
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 8.0e-28 127.1 102 68.6
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 1.0e-27 126.7 94 71.3
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 3.0e-27 125.2 103 68.0
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 4.0e-27 124.8 102 67.6
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 4.0e-27 124.8 102 68.6
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 4.0e-27 124.8 104 67.3
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 4.0e-27 124.8 97 69.1
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 6.7e-27 124.0 101 64.4
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 6.7e-27 124.0 105 66.7
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 1.1e-26 123.2 101 64.4
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.0e-26 122.5 103 67.0
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 3.3e-26 121.7 101 65.3
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 3.3e-26 121.7 102 67.6
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 3.3e-26 121.7 103 65.0
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 5.7e-26 120.9 102 65.7
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 5.7e-26 120.9 102 65.7
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 7.5e-26 120.6 103 67.0
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 9.7e-26 120.2 85 76.5
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 9.7e-26 120.2 95 70.5
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 6.3e-25 117.5 103 62.1
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 1.8e-24 115.9 102 64.7
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 2.4e-24 115.5 102 61.8
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 2.4e-24 115.5 102 61.8
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 2.4e-24 115.5 102 62.7
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 3.1e-24 115.2 85 72.9
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 3.1e-24 115.2 105 61.9
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 5.3e-24 114.4 80 77.5
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 9.1e-24 113.6 102 62.7
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 9.1e-24 113.6 83 75.9
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 1.6e-23 112.8 102 60.8
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 5.9e-23 110.9 102 59.8
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 6.5e-22 107.5 102 60.8
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 1.1e-21 106.7 103 61.2
Lalb_Chr10g0102391 Lupinus albus HOM05D003496 ORTHO05D003909 1.9e-21 105.9 67 85.1
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 1.9e-21 105.9 102 56.9
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 2.5e-21 105.5 105 59.0
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 1.2e-20 103.2 103 58.3
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 2.1e-20 102.4 70 75.7
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 2.1e-20 102.4 66 83.3
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 2.1e-20 102.4 66 83.3
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 6.1e-20 100.9 68 76.5
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 8.0e-20 100.5 70 74.3
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 1.0e-19 100.1 69 75.4
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 1.4e-19 99.8 69 75.4
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 1.4e-19 99.8 69 75.4
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 1.4e-19 99.8 69 75.4
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 1.8e-19 99.4 69 73.9
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 1.8e-19 99.4 68 76.5
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 1.8e-19 99.4 69 75.4
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 1.8e-19 99.4 103 59.2
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 3.0e-19 98.6 69 75.4
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 3.0e-19 98.6 69 75.4
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 3.0e-19 98.6 69 75.4
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 4.0e-19 98.2 65 78.5
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 5.2e-19 97.8 84 61.9
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 8.8e-19 97.1 103 55.3
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 2.6e-18 95.5 71 73.2
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 2.6e-18 95.5 103 51.5
FAN08G0731 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.4e-18 95.1 91 61.5
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 4.4e-18 94.7 66 77.3
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.7e-17 92.8 79 65.8
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 4.8e-17 91.3 65 75.4
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 8.3e-17 90.5 105 54.3
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 1.2e-15 86.7 101 57.4
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 1.6e-15 86.3 102 53.9
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 1.0e-14 83.6 74 63.5
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 1.7e-14 82.8 94 54.3
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 1.7e-14 82.8 94 54.3
Mapoly0040s0123 Marchantia polymorpha HOM05D003496 ORTHO05D003909 4.2e-13 78.2 102 42.2
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 7.2e-13 77.4 103 48.5
SEGI_13289 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 9.5e-13 77.0 74 59.5
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 1.6e-12 76.3 74 59.5
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 4.4e-10 68.2 55 69.1
SMO230G0003 Selaginella moellendorffii HOM05D003496 ORTHO05D003909 4.4e-10 68.2 103 39.8
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 9.8e-10 67.0 54 68.5


User provided reference genes

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