Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2538.1 1288 100.0
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2350.5 1288 90.8
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2333.5 1288 90.9
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2331.2 1288 90.4
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2236.1 1288 86.1
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2233.4 1288 85.7
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2232.6 1288 85.4
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2214.1 1288 85.1
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2197.5 1288 84.2
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2190.6 1287 83.9
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2189.1 1287 83.9
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2183.7 1302 83.6
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2182.5 1287 83.6
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2181.4 1288 83.7
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2178.7 1287 83.4
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2174.4 1288 83.9
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2169.8 1287 83.8
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2162.5 1288 83.3
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2162.5 1288 83.3
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2162.5 1288 83.2
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 2160.6 1215 88.7
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2159.4 1286 83.2
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2159.0 1288 83.2
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2157.9 1293 83.1
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2156.7 1288 83.2
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2145.9 1293 82.7
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2145.9 1287 82.4
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2145.2 1291 82.9
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2144.4 1287 82.5
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2144.4 1288 83.0
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2144.0 1289 82.8
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2142.9 1289 82.4
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2142.9 1289 82.7
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2141.7 1301 82.1
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2141.3 1288 82.7
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2135.5 1288 81.8
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2133.6 1288 82.2
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2131.3 1289 81.8
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2130.5 1301 81.4
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2124.4 1289 81.8
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2124.0 1295 81.6
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2121.7 1326 80.1
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2118.6 1297 81.1
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2106.6 1288 81.0
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2106.3 1304 81.1
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2102.4 1286 80.6
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2102.0 1304 80.8
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2097.8 1291 81.3
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2087.4 1286 79.9
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2085.8 1286 79.8
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2083.1 1286 79.7
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2081.2 1288 80.1
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2079.3 1288 80.4
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2078.9 1295 80.7
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2073.5 1287 79.5
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2072.4 1295 78.9
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2072.0 1290 79.2
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2072.0 1288 79.8
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2065.0 1294 79.9
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2061.2 1406 75.5
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2060.0 1312 79.0
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2059.6 1287 79.7
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2058.1 1298 78.4
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2058.1 1288 79.3
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2048.5 1290 79.8
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2042.3 1308 78.9
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2037.3 1289 78.4
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2028.8 1288 78.3
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2018.0 1299 77.4
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2017.3 1300 77.2
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 2012.3 1174 84.9
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 1985.3 1299 76.1
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1921.4 1223 78.0
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1905.2 1549 65.7
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1900.6 1293 73.7
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1859.7 1290 72.0
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1855.5 1289 73.5
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1726.5 1316 68.5
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1611.3 955 83.5
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1607.0 963 83.1
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1584.7 1182 69.5
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1575.5 1069 75.4
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1554.3 942 80.8
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1524.6 908 81.7
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1515.4 1210 64.5
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1503.8 1290 59.0
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1494.2 1295 58.3
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1477.2 1330 56.5
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1474.9 939 77.5
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1473.4 911 79.8
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1463.4 915 78.3
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1462.6 1290 57.1
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1436.4 913 77.7
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1434.9 911 77.4
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1386.7 956 73.0
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1376.7 846 79.8
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1319.3 1309 52.1
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1254.2 917 67.7
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1117.8 687 81.2
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 5.5e-264 915.2 803 61.4
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 5.8e-237 825.5 828 54.8
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 1.6e-234 817.4 476 85.5
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 9.3e-211 738.4 499 75.2
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 4.8e-207 726.1 451 81.8
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 8.1e-199 698.7 552 65.9
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 7.2e-179 632.5 351 91.5
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 3.9e-177 626.7 347 91.9
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 2.5e-176 624.0 347 91.1
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 9.1e-174 615.5 420 72.6
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 2.2e-172 610.9 353 88.1
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 2.2e-164 584.3 347 85.9
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 3.8e-164 583.6 347 85.9
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.1e-163 582.0 451 65.2
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 3.7e-159 567.0 347 83.9
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 9.7e-152 542.3 383 70.5
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 6.3e-151 539.7 639 45.4
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 1.5e-147 528.5 336 77.7
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 8.3e-143 512.7 280 93.2
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.8e-142 511.5 420 68.1
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 1.5e-128 465.3 303 74.3
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 1.5e-128 465.3 261 90.4
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.9e-123 448.4 300 71.0
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 2.5e-123 448.0 410 58.0
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 9.2e-118 429.5 274 83.2
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 2.3e-116 424.9 244 86.5
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 3.9e-108 397.5 347 61.7
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 7.6e-104 383.3 260 76.9
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 1.9e-102 378.6 266 77.4
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 9.9e-80 303.1 265 60.0
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 4.8e-74 284.3 154 92.2
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 4.5e-72 277.7 466 34.1
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.6e-69 269.2 167 79.0
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 8.8e-60 236.9 134 84.3
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 4.3e-59 234.6 130 88.5
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 2.2e-58 232.3 134 85.8
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.8e-57 229.2 426 36.9
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 5.5e-54 217.6 142 71.1
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 3.6e-53 214.9 119 84.0
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 4.8e-50 204.5 127 76.4
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 8.2e-42 177.2 127 69.3
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 9.4e-38 163.7 123 69.1
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 8.0e-37 160.6 113 67.3
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 1.0e-36 160.2 161 51.6
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.3e-34 153.3 128 66.4
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 1.1e-33 150.2 101 71.3
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 7.0e-33 147.5 101 70.3
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 1.2e-32 146.7 123 63.4
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 8.5e-31 140.6 95 65.3
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 7.5e-27 127.5 85 67.1
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 8.3e-26 124.0 74 81.1
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 8.3e-26 124.0 74 79.7
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 3.1e-25 122.1 73 76.7
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 6.6e-23 114.4 72 73.6
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 1.9e-22 112.8 130 50.0
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 4.5e-16 91.7 99 52.5
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 2.3e-15 89.4 54 74.1
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 1.2e-13 83.6 50 78.0
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 4.1e-09 68.6 142 35.9


User provided reference genes

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