Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14710 Avicennia marina HOM05D007507 ORTHO05D009420 2.6e-71 271.9 135 100.0
Migut.H01473 Erythranthe guttata HOM05D007507 ORTHO05D009420 3.2e-29 132.1 143 58.7
CSS0001598 Camellia sinensis var. sinensis HOM05D007507 ORTHO05D009420 8.1e-25 117.5 135 49.6
Actinidia16570 Actinidia chinensis HOM05D007507 ORTHO05D009420 4.0e-24 115.2 140 49.3
Sabra04G0030100 Salix brachista HOM05D007507 ORTHO05D009420 5.8e-23 111.3 139 51.1
Cc02_g13780 Coffea canephora HOM05D007507 ORTHO05D009420 7.6e-23 110.9 141 49.6
Migut.M01111 Erythranthe guttata HOM05D007507 ORTHO05D009420 1.7e-22 109.8 138 50.7
Actinidia05654 Actinidia chinensis HOM05D007507 ORTHO05D009420 3.8e-22 108.6 139 48.9
Potri.011G057400 Populus trichocarpa HOM05D007507 ORTHO05D009420 1.1e-21 107.1 141 48.9
CiPaw.10G052300 Carya illinoinensis HOM05D007507 ORTHO05D009420 1.4e-21 106.7 134 47.8
Oeu027697.1 Olea europaea HOM05D007507 ORTHO05D009420 1.4e-21 106.7 122 52.5
Phvul.002G232000 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 1.9e-21 106.3 132 45.5
Potri.004G048201 Populus trichocarpa HOM05D007507 ORTHO05D009420 1.9e-21 106.3 145 48.3
Dinv40597 Davidia involucrata HOM05D007507 ORTHO05D009420 2.4e-21 105.9 140 45.0
Manes.17G048900 Manihot esculenta HOM05D007507 ORTHO05D009420 4.2e-21 105.1 129 49.6
Glyma.13G175400 Glycine max HOM05D007507 ORTHO05D009420 5.4e-21 104.8 133 44.4
Dinv17350 Davidia involucrata HOM05D007507 ORTHO05D009420 9.3e-21 104.0 140 47.9
Glyma.07G201000 Glycine max HOM05D007507 ORTHO05D009420 9.3e-21 104.0 133 42.9
TAR626G1744 Trochodendron aralioides HOM05D007507 ORTHO05D009420 9.3e-21 104.0 133 46.6
VMungo0251G0526 Vigna mungo HOM05D007507 ORTHO05D009420 9.3e-21 104.0 136 44.1
SalBow8G4682 Salvia bowleyana HOM05D007507 ORTHO05D009420 1.6e-20 103.2 118 52.5
PGSC0003DMG400031763 Solanum tuberosum HOM05D007507 ORTHO05D009420 3.5e-20 102.1 136 47.8
GSVIVG01021107001 Vitis vinifera HOM05D007507 ORTHO05D009420 3.5e-20 102.1 143 45.5
Glyma.15G077500 Glycine max HOM05D007507 ORTHO05D009420 7.9e-20 100.9 136 44.9
QL05p042078 Quercus lobata HOM05D007507 ORTHO05D009420 1.0e-19 100.5 128 46.1
Oeu064800.1 Olea europaea HOM05D007507 ORTHO05D009420 1.3e-19 100.1 119 52.1
Sabra11G0039300 Salix brachista HOM05D007507 ORTHO05D009420 1.3e-19 100.1 146 46.6
HanXRQChr04g0113131 Helianthus annuus HOM05D007507 ORTHO05D009420 2.3e-19 99.4 140 43.6
Sopen02g022610 Solanum pennellii HOM05D007507 ORTHO05D009420 3.9e-19 98.6 138 47.1
Phvul.006G182800 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 5.1e-19 98.2 128 45.3
Solyc02g077720.4 Solanum lycopersicum HOM05D007507 ORTHO05D009420 5.1e-19 98.2 138 46.4
Thecc.06G181600 Theobroma cacao HOM05D007507 ORTHO05D009420 5.1e-19 98.2 137 44.5
arahy.Tifrunner.gnm1.ann1.UCBT0G Arachis hypogaea HOM05D007507 ORTHO05D009420 1.1e-18 97.1 130 47.7
Lsat_1_v5_gn_7_22681 Lactuca sativa HOM05D007507 ORTHO05D009420 1.9e-18 96.3 137 44.5
arahy.Tifrunner.gnm1.ann1.IERL18 Arachis hypogaea HOM05D007507 ORTHO05D009420 3.3e-18 95.5 83 63.9
Medtr4g088390 Medicago truncatula HOM05D007507 ORTHO05D009420 4.3e-18 95.1 97 57.7
Hma1.2p1_0558F.1_g178550 Hydrangea macrophylla HOM05D007507 ORTHO05D009420 5.6e-18 94.7 112 51.8
Nn1g04226 Nelumbo nucifera HOM05D007507 ORTHO05D009420 5.6e-18 94.7 123 44.7
Lalb_Chr20g0121601 Lupinus albus HOM05D007507 ORTHO05D009420 7.4e-18 94.4 141 40.4
Glyma.13G236200 Glycine max HOM05D007507 ORTHO05D009420 9.6e-18 94.0 114 47.4
Lj4g0010126 Lotus japonicus HOM05D007507 ORTHO05D009420 9.6e-18 94.0 145 38.6
MD05G1310700 Malus domestica HOM05D007507 ORTHO05D009420 2.1e-17 92.8 133 44.4
Duzib192G0611 Durio zibethinus HOM05D007507 ORTHO05D009420 2.8e-17 92.4 139 42.4
MBI07_g29118_MAGBIO Magnolia biondii HOM05D007507 ORTHO05D009420 2.8e-17 92.4 135 46.7
Manes.16G031300 Manihot esculenta HOM05D007507 ORTHO05D009420 3.6e-17 92.0 136 44.9
Duzib235G0685 Durio zibethinus HOM05D007507 ORTHO05D009420 4.8e-17 91.7 137 42.3
DCAR_004049 Daucus carota HOM05D007507 ORTHO05D009420 6.2e-17 91.3 124 45.2
Cpa.g.sc27.9 Carica papaya HOM05D007507 ORTHO05D009420 8.1e-17 90.9 134 42.5
Prupe.4G051900 Prunus persica HOM05D007507 ORTHO05D009420 1.8e-16 89.7 128 45.3
Atru.chr10.1803 Acer truncatum HOM05D007507 ORTHO05D009420 3.1e-16 89.0 151 39.7
MD10G1289800 Malus domestica HOM05D007507 ORTHO05D009420 3.1e-16 89.0 125 44.8
arahy.Tifrunner.gnm1.ann1.26E61A Arachis hypogaea HOM05D007507 ORTHO05D009420 4.0e-16 88.6 130 42.3
ECA236G3296 Erigeron canadensis HOM05D007507 ORTHO05D009420 4.0e-16 88.6 76 67.1
TPR.G19926 Trifolium pratense HOM05D007507 ORTHO05D009420 6.9e-16 87.8 97 53.6
TPR.G39426 Trifolium pratense HOM05D007507 ORTHO05D009420 6.9e-16 87.8 138 43.5
CANSAT35G2017 Cannabis sativa HOM05D007507 ORTHO05D009420 9.0e-16 87.4 115 49.6
Nitab4.5_0007893g0030 Nicotiana tabacum HOM05D007507 ORTHO05D009420 1.2e-15 87.0 125 46.4
Psat7g115600 Pisum sativum HOM05D007507 ORTHO05D009420 1.2e-15 87.0 147 42.9
SalBow8G0028 Salvia bowleyana HOM05D002091 ORTHO05D002140 1.2e-15 87.0 120 46.7
arahy.Tifrunner.gnm1.ann1.XNU6AG Arachis hypogaea HOM05D007507 ORTHO05D009420 1.5e-15 86.7 130 41.5
DCAR_008007 Daucus carota HOM05D007507 ORTHO05D009420 1.5e-15 86.7 133 42.9
VMungo0540G0304 Vigna mungo HOM05D007507 ORTHO05D009420 2.0e-15 86.3 131 44.3
Nitab4.5_0002813g0060 Nicotiana tabacum HOM05D007507 ORTHO05D009420 3.4e-15 85.5 125 44.8
Eucgr.E03247 Eucalyptus grandis HOM05D007507 ORTHO05D009420 5.8e-15 84.7 135 40.7
Gohir.A09G073500 Gossypium hirsutum HOM05D007507 ORTHO05D009420 5.8e-15 84.7 140 41.4
Medtr2g014380 Medicago truncatula HOM05D007507 ORTHO05D009420 5.8e-15 84.7 138 42.0
RcHm_v2.0_Chr5g0009091 Rosa chinensis HOM05D007507 ORTHO05D009420 5.8e-15 84.7 130 44.6
Ciclev10016932m.g Citrus clementina HOM05D007507 ORTHO05D009420 9.9e-15 84.0 126 44.4
Gohir.A05G159400 Gossypium hirsutum HOM05D007507 ORTHO05D009420 1.3e-14 83.6 140 42.9
Gohir.D09G073200 Gossypium hirsutum HOM05D007507 ORTHO05D009420 1.3e-14 83.6 140 39.3
Gorai.006G088200 Gossypium raimondii HOM05D007507 ORTHO05D009420 1.3e-14 83.6 140 39.3
Atru.chr10.1804 Acer truncatum HOM05D007507 ORTHO05D009420 1.7e-14 83.2 144 39.6
FAN21G1585 Fragaria x ananassa HOM05D007507 ORTHO05D009420 1.7e-14 83.2 130 43.8
FvH4_3g08680 Fragaria vesca HOM05D007507 ORTHO05D009420 2.2e-14 82.8 130 43.1
PSO675G6999 Papaver somniferum HOM05D007507 ORTHO05D009420 2.2e-14 82.8 126 39.7
Gorai.009G167100 Gossypium raimondii HOM05D007507 ORTHO05D009420 2.9e-14 82.4 130 43.1
SalBow8G0489 Salvia bowleyana HOM05D007507 ORTHO05D009420 4.9e-14 81.6 68 67.6
ClCG01G023220 Citrullus lanatus HOM05D007507 ORTHO05D009420 6.4e-14 81.3 137 43.1
Oeu015676.1 Olea europaea HOM05D007507 ORTHO05D009420 6.4e-14 81.3 119 49.6
Aqoxy4G00641 Aquilegia oxysepala HOM05D007507 ORTHO05D009420 8.4e-14 80.9 79 58.2
Gohir.D05G162100 Gossypium hirsutum HOM05D007507 ORTHO05D009420 8.4e-14 80.9 130 43.1
TWI38G1903 Tripterygium wilfordii HOM05D007507 ORTHO05D009420 8.4e-14 80.9 131 42.7
PSO541G3558 Papaver somniferum HOM05D007507 ORTHO05D009420 1.9e-13 79.7 93 46.2
FAN11G0818 Fragaria x ananassa HOM05D007507 ORTHO05D009420 2.4e-13 79.3 131 43.5
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 3.5e-12 75.5 103 46.6
CsaV3_6G050370 Cucumis sativus L. HOM05D007507 ORTHO05D009420 6.0e-12 74.7 86 54.7
PGR042G2392 Punica granatum HOM05D007507 ORTHO05D009420 3.0e-11 72.4 80 53.8
Gohir.D06G135900 Gossypium hirsutum HOM05D007507 ORTHO05D009420 8.7e-11 70.9 143 37.1
Gorai.010G158100 Gossypium raimondii HOM05D007507 ORTHO05D009420 1.1e-10 70.5 143 36.4
Sed0011593 Sechium edule HOM05D007507 ORTHO05D009420 1.3e-09 67.0 118 40.7
SEGI_35508 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 1.4e-08 63.5 68 51.5
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 2.4e-08 62.8 78 47.4
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 5.3e-08 61.6 71 52.1
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 9.0e-08 60.8 77 49.4
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 1.2e-07 60.5 71 47.9
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 1.2e-07 60.5 71 47.9
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 1.2e-07 60.5 66 54.5
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.2e-07 60.5 72 51.4
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 1.5e-07 60.1 71 50.7
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 2.0e-07 59.7 72 50.0
MELO3C007264.2 Cucumis melo HOM05D007507 ORTHO05D009420 2.0e-07 59.7 97 45.4
Haze_06387 Corylus avellana HOM05D007507 ORTHO05D009420 2.6e-07 59.3 129 34.1
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 2.6e-07 59.3 71 52.1
Peaxi162Scf00926g00516 Petunia axillaris HOM05D007507 ORTHO05D009420 2.6e-07 59.3 143 31.5
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 3.4e-07 58.9 77 46.8
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 4.5e-07 58.5 70 42.9
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 4.5e-07 58.5 67 50.7
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 5.8e-07 58.2 72 48.6
SEGI_36970 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 5.8e-07 58.2 67 52.2
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 5.8e-07 58.2 71 47.9
arahy.Tifrunner.gnm1.ann1.PE4GJ8 Arachis hypogaea HOM05D000372 ORTHO05D009420 7.6e-07 57.8 54 55.6
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 7.6e-07 57.8 71 49.3
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 7.6e-07 57.8 70 48.6
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 1.0e-06 57.4 68 50.0
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 1.0e-06 57.4 101 39.6
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 1.0e-06 57.4 71 47.9
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 1.0e-06 57.4 71 49.3
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 1.0e-06 57.4 71 49.3
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.3e-06 57.0 70 48.6
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 1.7e-06 56.6 72 47.2
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 1.7e-06 56.6 71 47.9
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 1.7e-06 56.6 71 47.9
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 1.7e-06 56.6 72 45.8
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 1.7e-06 56.6 76 48.7
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 1.7e-06 56.6 72 45.8
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 2.2e-06 56.2 71 47.9
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 2.9e-06 55.8 71 49.3
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 2.9e-06 55.8 67 50.7
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 2.9e-06 55.8 71 49.3
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.9e-06 55.8 71 47.9
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 2.9e-06 55.8 72 45.8
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 2.9e-06 55.8 70 44.3
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 3.8e-06 55.5 71 47.9
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 3.8e-06 55.5 70 47.1
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.9e-06 55.1 72 50.0
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 4.9e-06 55.1 73 47.9
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 4.9e-06 55.1 71 46.5
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 4.9e-06 55.1 77 46.8
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 4.9e-06 55.1 71 46.5
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 6.5e-06 54.7 68 48.5
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 6.5e-06 54.7 67 49.3
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 6.5e-06 54.7 71 50.7
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 6.5e-06 54.7 71 46.5
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 6.5e-06 54.7 67 47.8
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 6.5e-06 54.7 79 46.8
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 6.5e-06 54.7 78 43.6
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 8.4e-06 54.3 71 49.3
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 8.4e-06 54.3 72 50.0
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 8.4e-06 54.3 66 48.5
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 8.4e-06 54.3 68 51.5
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 8.4e-06 54.3 72 50.0
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 8.4e-06 54.3 70 50.0


User provided reference genes

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