Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1468 Avicennia marina HOM05D000555 ORTHO05D001906 6.8e-63 243.8 123 100.0
SalBow7G4584 Salvia bowleyana HOM05D000555 ORTHO05D007211 8.1e-40 167.2 120 68.3
Migut.C01134 Erythranthe guttata HOM05D000555 ORTHO05D001906 4.0e-39 164.9 119 70.6
Oeu017294.2 Olea europaea HOM05D000555 ORTHO05D001906 1.8e-34 149.4 123 65.0
SGA_v2.0_scaffold52G18968 Striga asiatica HOM05D000555 ORTHO05D001906 1.5e-33 146.4 120 63.3
MBI09_g12164_MAGBIO Magnolia biondii HOM05D000555 ORTHO05D001906 1.6e-27 126.3 120 53.3
CAN.G1396.9 Capsicum annuum HOM05D000555 ORTHO05D001906 3.5e-27 125.2 126 54.8
Peaxi162Scf00051g00732 Petunia axillaris HOM05D000555 ORTHO05D001906 6.0e-27 124.4 124 52.4
CSS0047814 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D001906 1.3e-26 123.2 119 54.6
Solyc06g060380.3 Solanum lycopersicum HOM05D000555 ORTHO05D001906 6.7e-26 120.9 126 50.0
Cc10_g11730 Coffea canephora HOM05D000555 ORTHO05D001906 8.7e-26 120.6 125 52.0
Cfa016012 Carpinus fangiana HOM05D000555 ORTHO05D001906 1.5e-25 119.8 120 49.2
CiPaw.05G222400 Carya illinoinensis HOM05D000555 ORTHO05D001906 2.5e-25 119.0 123 50.4
Nn5g28268 Nelumbo nucifera HOM05D000555 ORTHO05D001906 2.5e-25 119.0 120 52.5
Nitab4.5_0004882g0040 Nicotiana tabacum HOM05D000555 ORTHO05D001906 3.3e-25 118.6 130 50.0
Prupe.1G499400 Prunus persica HOM05D000555 ORTHO05D001906 3.3e-25 118.6 120 51.7
GSVIVG01008876001 Vitis vinifera HOM05D000555 ORTHO05D001906 5.7e-25 117.9 120 51.7
RcHm_v2.0_Chr6g0295681 Rosa chinensis HOM05D000555 ORTHO05D001906 1.6e-24 116.3 120 52.5
Sopen06g020520 Solanum pennellii HOM05D000555 ORTHO05D001906 2.8e-24 115.5 126 47.6
Thecc.08G124600 Theobroma cacao HOM05D000555 ORTHO05D001906 3.7e-24 115.2 120 49.2
FvH4_2g26820 Fragaria vesca HOM05D000555 ORTHO05D001906 8.2e-24 114.0 120 52.5
FAN20G1220 Fragaria x ananassa HOM05D000555 ORTHO05D001906 8.2e-24 114.0 120 52.5
FAN27G2775 Fragaria x ananassa HOM05D000555 ORTHO05D001906 8.2e-24 114.0 120 52.5
FAN15G2287 Fragaria x ananassa HOM05D000555 ORTHO05D001906 1.8e-23 112.8 120 51.7
MD15G1350300 Malus domestica HOM05D000555 ORTHO05D001906 3.1e-23 112.1 120 50.0
Lalb_Chr10g0101751 Lupinus albus HOM05D000555 ORTHO05D001906 5.3e-23 111.3 122 49.2
QL09p034959 Quercus lobata HOM05D000555 ORTHO05D001906 5.3e-23 111.3 120 46.7
DCAR_003549 Daucus carota HOM05D000555 ORTHO05D001906 9.0e-23 110.5 120 50.0
Eucgr.F03787 Eucalyptus grandis HOM05D000555 ORTHO05D001906 1.2e-22 110.2 120 48.3
TAR381G0759 Trochodendron aralioides HOM05D000555 ORTHO05D001906 1.2e-22 110.2 120 51.7
Atru.chr13.1458 Acer truncatum HOM05D000555 ORTHO05D001906 1.5e-22 109.8 119 49.6
Atru.chr13.1481 Acer truncatum HOM05D000555 ORTHO05D001906 1.5e-22 109.8 119 49.6
Psat6g099000 Pisum sativum HOM05D000555 ORTHO05D001906 1.5e-22 109.8 122 48.4
TWI56G0829 Tripterygium wilfordii HOM05D000555 ORTHO05D001906 1.5e-22 109.8 119 49.6
Gohir.D01G180700 Gossypium hirsutum HOM05D000555 ORTHO05D001906 2.0e-22 109.4 120 47.5
Aqoxy6G00208 Aquilegia oxysepala HOM05D000555 ORTHO05D001906 2.6e-22 109.0 120 48.3
Ca_14564_v3 Cicer arietinum L. HOM05D000555 ORTHO05D001906 2.6e-22 109.0 122 47.5
Dinv27321 Davidia involucrata HOM05D000555 ORTHO05D001906 2.6e-22 109.0 119 51.3
Duzib116G0370 Durio zibethinus HOM05D000555 ORTHO05D001906 3.4e-22 108.6 120 46.7
Gorai.002G221900 Gossypium raimondii HOM05D000555 ORTHO05D001906 3.4e-22 108.6 120 47.5
Potri.002G084300 Populus trichocarpa HOM05D000555 ORTHO05D001906 4.5e-22 108.2 120 48.3
HanXRQChr11g0326001 Helianthus annuus HOM05D000555 ORTHO05D001906 7.6e-22 107.5 120 45.0
Cpa.g.sc36.61 Carica papaya HOM05D000555 ORTHO05D001906 1.3e-21 106.7 120 49.2
PGR042G0600 Punica granatum HOM05D000555 ORTHO05D001906 1.3e-21 106.7 120 45.0
Gohir.A01G188800 Gossypium hirsutum HOM05D000555 ORTHO05D001906 1.7e-21 106.3 120 46.7
CDE06G0174 Ceratophyllum demersum HOM05D000555 ORTHO05D001906 2.2e-21 105.9 120 45.0
SEGI_17720 Sequoiadendron giganteum HOM05D000555 ORTHO05D001906 6.5e-21 104.4 120 46.7
ClCG11G015780 Citrullus lanatus HOM05D006264 ORTHO05D007739 8.5e-21 104.0 120 48.3
TPR.G8250 Trifolium pratense HOM05D000555 ORTHO05D001906 8.5e-21 104.0 122 44.3
CANSAT11G2461 Cannabis sativa HOM05D000555 ORTHO05D001906 1.4e-20 103.2 120 49.2
MD08G1164000 Malus domestica HOM05D000555 ORTHO05D001906 1.4e-20 103.2 120 46.7
Manes.18G076700 Manihot esculenta HOM05D000555 ORTHO05D001906 1.4e-20 103.2 120 45.0
Lj1g0015636 Lotus japonicus HOM05D000555 ORTHO05D001906 1.9e-20 102.8 122 45.1
Medtr1g037280 Medicago truncatula HOM05D000555 ORTHO05D001906 4.2e-20 101.7 122 44.3
ATR0584G256 Amborella trichopoda HOM05D000555 ORTHO05D001906 5.5e-20 101.3 131 44.3
SHI55104 Sapria himalayana HOM05D000555 ORTHO05D001906 5.5e-20 101.3 120 44.2
ECA232G2241 Erigeron canadensis HOM05D000555 ORTHO05D001906 7.2e-20 100.9 120 42.5
Ciclev10003517m.g Citrus clementina HOM05D000555 ORTHO05D001906 1.2e-19 100.1 119 45.4
Sc02g0006040 Simmondsia chinensis HOM05D000555 ORTHO05D001906 1.2e-19 100.1 120 45.8
arahy.Tifrunner.gnm1.ann1.028SBR Arachis hypogaea HOM05D000555 ORTHO05D001906 2.7e-19 99.0 121 44.6
arahy.Tifrunner.gnm1.ann1.1A3YDX Arachis hypogaea HOM05D000555 ORTHO05D001906 2.7e-19 99.0 121 44.6
Lsat_1_v5_gn_4_134440 Lactuca sativa HOM05D000555 ORTHO05D001906 2.7e-19 99.0 120 43.3
CsaV3_4G028210 Cucumis sativus L. HOM05D000555 ORTHO05D001906 3.6e-19 98.6 120 46.7
Sabra02G0065900 Salix brachista HOM05D000555 ORTHO05D001906 4.6e-19 98.2 128 45.3
Hund17289 Selenicereus undatus HOM05D000555 ORTHO05D001906 4.6e-19 98.2 120 48.3
MELO3C010481.2 Cucumis melo HOM05D000555 ORTHO05D001906 7.9e-19 97.4 120 46.7
Mapoly0004s0286 Marchantia polymorpha HOM05D000555 ORTHO05D001906 1.0e-18 97.1 122 41.8
EL10Ac1g01004 Beta vulgaris HOM05D000555 ORTHO05D001906 1.4e-18 96.7 120 46.7
AUR62014342 Chenopodium quinoa HOM05D000555 ORTHO05D001906 5.1e-18 94.7 120 44.2
AUR62019084 Chenopodium quinoa HOM05D000555 ORTHO05D001906 5.1e-18 94.7 120 44.2
Nitab4.5_0000633g0190 Nicotiana tabacum HOM05D000555 ORTHO05D001906 5.1e-18 94.7 79 60.8
FvH4_2g27295 Fragaria vesca HOM05D000555 ORTHO05D001906 1.5e-17 93.2 84 57.1
Haze_00451 Corylus avellana HOM05D000555 ORTHO05D001906 2.5e-17 92.4 69 60.9
TPR.G25501 Trifolium pratense HOM05D000555 ORTHO05D001906 3.3e-17 92.0 123 39.8
Sed0006597 Sechium edule HOM05D000555 ORTHO05D001906 4.3e-17 91.7 113 43.4
Glyma.13G080300 Glycine max HOM05D000555 ORTHO05D001906 7.4e-17 90.9 122 41.8
PSO170G2163 Papaver somniferum HOM05D000555 ORTHO05D001906 2.2e-16 89.4 119 40.3
PSO528G0268 Papaver somniferum HOM05D000555 ORTHO05D001906 3.7e-16 88.6 119 39.5
CARHR071110 Cardamine hirsuta HOM05D000555 ORTHO05D001906 6.3e-16 87.8 115 40.0
Glyma.14G149066 Glycine max HOM05D000555 ORTHO05D001906 8.2e-16 87.4 89 49.4
FAN24G2587 Fragaria x ananassa HOM05D000555 ORTHO05D001906 1.4e-15 86.7 66 66.7
Phvul.008G163350 Phaseolus vulgaris HOM05D000555 ORTHO05D001906 1.4e-15 86.7 117 40.2
TPR.G6661 Trifolium pratense HOM05D000555 ORTHO05D001906 4.1e-15 85.1 87 51.7
COL.COLO4_35931 Corchorus olitorius HOM05D000555 ORTHO05D001906 5.3e-15 84.7 121 39.7
Sp5g32750 Schrenkiella parvula HOM05D000555 ORTHO05D001906 5.3e-15 84.7 115 40.0
AL2G37810 Arabidopsis lyrata HOM05D000555 ORTHO05D001906 6.9e-15 84.3 114 38.6
BcaC03g15748 Brassica carinata HOM05D000555 ORTHO05D001906 9.1e-15 84.0 115 39.1
Thhalv10018009m.g Eutrema salsugineum HOM05D000555 ORTHO05D001906 9.1e-15 84.0 115 38.3
BcaB05g25062 Brassica carinata HOM05D000555 ORTHO05D001906 1.2e-14 83.6 115 40.0
Aa31LG4G7710 Aethionema arabicum HOM05D000555 ORTHO05D001906 1.5e-14 83.2 114 40.4
Zm00001eb146530 Zea mays HOM05D000555 ORTHO05D001906 1.5e-14 83.2 110 41.8
AT1G77600 Arabidopsis thaliana HOM05D000555 ORTHO05D001906 2.0e-14 82.8 119 37.0
BraA02t07153Z Brassica rapa HOM05D000555 ORTHO05D001906 2.0e-14 82.8 115 39.1
Carub.0002s2449 Capsella rubella HOM05D000555 ORTHO05D001906 2.0e-14 82.8 119 37.0
Duzib093G1130 Durio zibethinus HOM05D000555 ORTHO05D001906 2.0e-14 82.8 74 50.0
A02p21430 Brassica napus HOM05D000555 ORTHO05D001906 2.6e-14 82.4 115 39.1
C02p34810 Brassica napus HOM05D000555 ORTHO05D001906 2.6e-14 82.4 115 39.1
BolC2t09500H Brassica oleracea HOM05D000555 ORTHO05D001906 3.4e-14 82.0 115 39.1
CBR_g19098 Chara braunii HOM05D000555 ORTHO05D001906 2.2e-13 79.3 122 32.0
VMungo0647G1974 Vigna mungo HOM05D000555 ORTHO05D001906 2.9e-13 79.0 115 40.9
Rhsim06G0104100 Rhododendron simsii HOM05D000555 ORTHO05D001906 6.5e-13 77.8 59 62.7
Ah.05g171140 Amaranthus hybridus HOM05D000555 ORTHO05D001906 3.2e-12 75.5 120 37.5
Pp3c20_23000 Physcomitrium patens HOM05D000555 ORTHO05D001906 1.6e-11 73.2 121 33.1
VMungo0540G1053 Vigna mungo HOM05D000555 ORTHO05D001906 2.1e-11 72.8 119 33.6
AagrBONN_evm.TU.Sc2ySwM_344.2222 Anthoceros agrestis HOM05D000555 ORTHO05D001906 3.6e-11 72.0 121 33.9
Glyma.07G268200 Glycine max HOM05D000555 ORTHO05D001906 3.6e-11 72.0 122 33.6
Pp3c10_24900 Physcomitrium patens HOM05D000555 ORTHO05D001906 3.6e-11 72.0 121 32.2
Gorai.010G248500 Gossypium raimondii HOM05D000555 ORTHO05D001906 4.7e-11 71.6 121 37.2
Pp3c23_10270 Physcomitrium patens HOM05D000555 ORTHO05D001906 4.7e-11 71.6 122 34.4
CiPaw.10G082000 Carya illinoinensis HOM05D000555 ORTHO05D001906 6.1e-11 71.2 120 38.3
AL8G10260 Arabidopsis lyrata HOM05D000555 ORTHO05D001906 1.4e-10 70.1 119 32.8
SEGI_14130 Sequoiadendron giganteum HOM05D000555 ORTHO05D001906 1.8e-10 69.7 119 33.6
Peaxi162Scf00827g00520 Petunia axillaris HOM05D000555 ORTHO05D001906 2.3e-10 69.3 119 34.5
Phvul.003G087100 Phaseolus vulgaris HOM05D000555 ORTHO05D001906 3.9e-10 68.6 119 33.6
PGR042G1037 Punica granatum HOM05D000555 ORTHO05D001906 3.9e-10 68.6 118 35.6
CiPaw.09G108900 Carya illinoinensis HOM05D000555 ORTHO05D001906 5.1e-10 68.2 119 36.1
Lj4g0005227 Lotus japonicus HOM05D000555 ORTHO05D001906 5.1e-10 68.2 120 36.7
Lalb_Chr20g0119541 Lupinus albus HOM05D000555 ORTHO05D001906 5.1e-10 68.2 120 30.8
CAN.G1156.22 Capsicum annuum HOM05D000555 ORTHO05D001906 8.8e-10 67.4 119 33.6
Thhalv10000739m.g Eutrema salsugineum HOM05D000555 ORTHO05D001906 1.1e-09 67.0 119 31.9
Glyma.17G005500 Glycine max HOM05D000555 ORTHO05D001906 1.1e-09 67.0 119 34.5
DCAR_030833 Daucus carota HOM05D000555 ORTHO05D001906 1.5e-09 66.6 118 34.7
Duzib235G0542 Durio zibethinus HOM05D000555 ORTHO05D001906 1.5e-09 66.6 119 33.6
Nitab4.5_0001296g0110 Nicotiana tabacum HOM05D000555 ORTHO05D001906 1.5e-09 66.6 119 33.6
SGA_v2.0_scaffold49G18219 Striga asiatica HOM05D000555 ORTHO05D001906 1.5e-09 66.6 119 35.3
TWI38G2314 Tripterygium wilfordii HOM05D000555 ORTHO05D001906 1.5e-09 66.6 119 33.6
arahy.Tifrunner.gnm1.ann1.AVE6NE Arachis hypogaea HOM05D000555 ORTHO05D001906 2.0e-09 66.2 119 34.5
arahy.Tifrunner.gnm1.ann1.M87LIL Arachis hypogaea HOM05D000555 ORTHO05D001906 2.0e-09 66.2 119 34.5
Cc09_g00310 Coffea canephora HOM05D000555 ORTHO05D001906 2.0e-09 66.2 119 31.1
GSVIVG01002731001 Vitis vinifera HOM05D000555 ORTHO05D001906 2.0e-09 66.2 120 35.8
GSVIVG01004270001 Vitis vinifera HOM05D000555 ORTHO05D000646 2.0e-09 66.2 120 35.8
Cpa.g.sc27.226 Carica papaya HOM05D000555 ORTHO05D001906 2.6e-09 65.9 119 35.3
Gohir.D06G217750 Gossypium hirsutum HOM05D000555 ORTHO05D001906 2.6e-09 65.9 121 35.5
Ca_20991_v3 Cicer arietinum L. HOM05D000555 ORTHO05D001906 3.3e-09 65.5 119 33.6
Sp2g12400 Schrenkiella parvula HOM05D000555 ORTHO05D001906 3.3e-09 65.5 119 31.9
AT5G47690 Arabidopsis thaliana HOM05D000555 ORTHO05D001906 4.4e-09 65.1 119 31.9
A02p31510 Brassica napus HOM05D000555 ORTHO05D001906 4.4e-09 65.1 119 31.9
BolC2t10981H Brassica oleracea HOM05D000555 ORTHO05D001906 4.4e-09 65.1 119 31.9
BraA02t08154Z Brassica rapa HOM05D000555 ORTHO05D001906 4.4e-09 65.1 119 31.9
Carub.0008s0009 Capsella rubella HOM05D000555 ORTHO05D001906 4.4e-09 65.1 119 31.1
C02p48870 Brassica napus HOM05D000555 ORTHO05D001906 5.7e-09 64.7 119 31.9
CSS0020180 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D001906 5.7e-09 64.7 120 34.2
Medtr4g134080 Medicago truncatula HOM05D000555 ORTHO05D001906 5.7e-09 64.7 120 35.0
QL05p067756 Quercus lobata HOM05D000555 ORTHO05D001906 5.7e-09 64.7 119 36.1
Solyc11g012770.2 Solanum lycopersicum HOM05D000555 ORTHO05D001906 5.7e-09 64.7 119 32.8
Sopen11g007510 Solanum pennellii HOM05D000555 ORTHO05D001906 5.7e-09 64.7 119 32.8
CARHR173620 Cardamine hirsuta HOM05D000555 ORTHO05D001906 7.4e-09 64.3 119 31.9
Nn1g07523 Nelumbo nucifera HOM05D000555 ORTHO05D001906 7.4e-09 64.3 119 32.8
THA.LOC104806739 Tarenaya hassleriana HOM05D000555 ORTHO05D001906 7.4e-09 64.3 119 30.3
Sabra06G0004000 Salix brachista HOM05D000555 ORTHO05D001906 9.7e-09 63.9 118 33.1
Aqoxy1G02801 Aquilegia oxysepala HOM05D000555 ORTHO05D001906 1.3e-08 63.5 116 31.0
Haze_07020 Corylus avellana HOM05D000555 ORTHO05D001906 1.3e-08 63.5 129 34.1
Lsat_1_v5_gn_4_63920 Lactuca sativa HOM05D000555 ORTHO05D001906 1.3e-08 63.5 120 30.0
Oeu025966.1 Olea europaea HOM05D000555 ORTHO05D001906 1.3e-08 63.5 119 35.3
unitig_26.g9404 Utricularia gibba HOM05D000555 ORTHO05D001906 1.3e-08 63.5 119 35.3
Aa31sc219G80 Aethionema arabicum HOM05D000555 ORTHO05D001906 1.7e-08 63.2 119 31.1
Gorai.005G163300 Gossypium raimondii HOM05D000555 ORTHO05D001906 1.7e-08 63.2 119 33.6
Rhsim13G0140500 Rhododendron simsii HOM05D000555 ORTHO05D001906 1.7e-08 63.2 118 34.7
MSTRG.16054 Avicennia marina HOM05D000555 ORTHO05D001906 2.8e-08 62.4 119 31.9
Potri.006G004750 Populus trichocarpa HOM05D000555 ORTHO05D001906 2.8e-08 62.4 118 32.2
CSS0012615 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D001906 4.8e-08 61.6 118 31.4
Lsat_1_v5_gn_1_130161 Lactuca sativa HOM05D000555 ORTHO05D001906 4.8e-08 61.6 119 33.6
Potri.016G005400 Populus trichocarpa HOM05D000555 ORTHO05D001906 4.8e-08 61.6 118 31.4
Sabra16G0010300 Salix brachista HOM05D000555 ORTHO05D001906 4.8e-08 61.6 118 31.4
Sc17g0008000 Simmondsia chinensis HOM05D000555 ORTHO05D001906 4.8e-08 61.6 121 28.9
CSS0028716 Camellia sinensis var. sinensis HOM05D000555 ORTHO05D001906 6.3e-08 61.2 118 31.4
vmacro03607 Vaccinium macrocarpon HOM05D000555 ORTHO05D001906 6.3e-08 61.2 118 34.7
Lalb_Chr07g0176931 Lupinus albus HOM05D000555 ORTHO05D001906 1.1e-07 60.5 123 31.7
MBI14_g10147_MAGBIO Magnolia biondii HOM05D000555 ORTHO05D001906 1.1e-07 60.5 118 31.4
Manes.09G083700 Manihot esculenta HOM05D000555 ORTHO05D001906 1.1e-07 60.5 118 33.1
ECA234G0651 Erigeron canadensis HOM05D000555 ORTHO05D001906 1.4e-07 60.1 119 31.9
SalBow1G3972 Salvia bowleyana HOM05D000555 ORTHO05D001906 1.8e-07 59.7 119 31.9
Actinidia01447 Actinidia chinensis HOM05D000555 ORTHO05D001906 2.4e-07 59.3 120 33.3
Eucgr.E03853 Eucalyptus grandis HOM05D000555 ORTHO05D001906 4.1e-07 58.5 118 30.5
HanXRQChr01g0003561 Helianthus annuus HOM05D000555 ORTHO05D001906 5.3e-07 58.2 119 28.6
SGA_v2.0_scaffold239G43974 Striga asiatica HOM05D000555 ORTHO05D001906 5.3e-07 58.2 118 32.2
THA.LOC104812796 Tarenaya hassleriana HOM05D000555 ORTHO05D001906 7.0e-07 57.8 119 31.1
PSO210G1034 Papaver somniferum HOM05D000555 ORTHO05D001906 1.2e-06 57.0 119 26.9
SGA_v2.0_scaffold7G03693 Striga asiatica HOM05D000555 ORTHO05D001906 2.0e-06 56.2 121 29.8
SEGI_34016 Sequoiadendron giganteum HOM05D000555 ORTHO05D000646 3.4e-06 55.5 110 30.0
HPP92_003147 Vanilla planifolia HOM05D000555 ORTHO05D001906 4.5e-06 55.1 87 37.9


User provided reference genes

Program Settings