Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14615 Avicennia marina HOM05D005388 ORTHO05D006281 8.1e-94 347.1 174 100.0
Migut.M01387 Erythranthe guttata HOM05D005388 ORTHO05D006281 2.7e-33 146.0 148 55.4
Migut.H01601 Erythranthe guttata HOM05D005388 ORTHO05D006281 8.8e-32 141.0 148 55.4
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 7.5e-31 137.9 149 55.0
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 2.3e-27 126.3 150 54.0
Lj2A262G50 Lonicera japonica HOM05D005388 ORTHO05D006281 2.1e-25 119.8 130 56.2
Cc09_g05060 Coffea canephora HOM05D005388 ORTHO05D006281 6.1e-25 118.2 113 54.9
Cc09_g05080 Coffea canephora HOM05D005388 ORTHO05D006281 1.0e-24 117.5 118 53.4
Dinv13961 Davidia involucrata HOM05D005388 ORTHO05D006281 1.2e-23 114.0 157 47.8
GSVIVG01004448001 Vitis vinifera HOM05D005388 ORTHO05D006281 2.6e-23 112.8 149 49.7
CSS0028564 Camellia sinensis var. sinensis HOM05D005388 ORTHO05D006281 2.2e-22 109.8 152 46.1
MELO3C024353.2 Cucumis melo HOM05D005388 ORTHO05D006281 2.2e-22 109.8 147 46.3
PSO384G2339 Papaver somniferum HOM05D005388 ORTHO05D006281 2.8e-22 109.4 148 47.3
Thecc.06G231900 Theobroma cacao HOM05D005388 ORTHO05D006281 2.8e-22 109.4 144 47.2
Phvul.001G115300 Phaseolus vulgaris HOM05D005388 ORTHO05D006281 6.3e-22 108.2 158 48.1
Actinidia26868 Actinidia chinensis HOM05D005388 ORTHO05D006281 1.4e-21 107.1 98 62.2
PGSC0003DMG400013269 Solanum tuberosum HOM05D005388 ORTHO05D006281 1.8e-21 106.7 110 53.6
arahy.Tifrunner.gnm1.ann1.KLAQ17 Arachis hypogaea HOM05D005388 ORTHO05D006281 2.4e-21 106.3 62 79.0
Gohir.D06G159300 Gossypium hirsutum HOM05D005388 ORTHO05D006281 2.4e-21 106.3 125 51.2
Duzib160G0783 Durio zibethinus HOM05D005388 ORTHO05D006281 3.1e-21 105.9 155 45.2
FAN04G2929 Fragaria x ananassa HOM05D001252 ORTHO05D006281 3.1e-21 105.9 116 51.7
FAN11G1084 Fragaria x ananassa HOM05D001252 ORTHO05D006281 3.1e-21 105.9 116 51.7
FAN13G0148 Fragaria x ananassa HOM05D001252 ORTHO05D001263 3.1e-21 105.9 116 51.7
FAN24G1366 Fragaria x ananassa HOM05D001252 ORTHO05D006281 3.1e-21 105.9 116 51.7
Gorai.010G186000 Gossypium raimondii HOM05D005388 ORTHO05D006281 3.1e-21 105.9 125 51.2
Solyc11g012100.2 Solanum lycopersicum HOM05D005388 ORTHO05D006281 3.1e-21 105.9 152 46.7
arahy.Tifrunner.gnm1.ann1.NIL5QZ Arachis hypogaea HOM05D005388 ORTHO05D006281 4.1e-21 105.5 62 79.0
arahy.Tifrunner.gnm1.ann1.UC4N4Q Arachis hypogaea HOM05D005388 ORTHO05D006281 4.1e-21 105.5 147 46.3
Lalb_Chr22g0358501 Lupinus albus HOM05D005388 ORTHO05D006281 4.1e-21 105.5 157 44.6
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 4.1e-21 105.5 126 53.2
PSO339G1452 Papaver somniferum HOM05D005388 ORTHO05D006281 5.4e-21 105.1 149 43.6
arahy.Tifrunner.gnm1.ann1.506A6S Arachis hypogaea HOM05D005388 ORTHO05D006281 7.0e-21 104.8 147 46.3
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 7.0e-21 104.8 116 51.7
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 7.0e-21 104.8 116 51.7
Gohir.A06G152900 Gossypium hirsutum HOM05D005388 ORTHO05D006281 7.0e-21 104.8 127 48.8
Hma1.2p1_0660F.1_g197565 Hydrangea macrophylla HOM05D005388 ORTHO05D006281 7.0e-21 104.8 92 62.0
Sopen11g006890 Solanum pennellii HOM05D005388 ORTHO05D006281 7.0e-21 104.8 152 46.1
Lsat_1_v5_gn_5_121860 Lactuca sativa HOM05D005388 ORTHO05D006281 1.2e-20 104.0 128 48.4
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.6e-20 103.6 116 50.9
Atru.chr1.2476 Acer truncatum HOM05D005388 ORTHO05D006281 2.0e-20 103.2 145 47.6
Actinidia02320 Actinidia chinensis HOM05D005388 ORTHO05D006281 2.0e-20 103.2 155 44.5
Prupe.4G012000 Prunus persica HOM05D005388 ORTHO05D006281 2.0e-20 103.2 125 48.0
COL.COLO4_31868 Corchorus olitorius HOM05D005388 ORTHO05D006281 2.7e-20 102.8 91 59.3
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.5e-20 102.4 116 50.9
Psat6g035160 Pisum sativum HOM05D005388 ORTHO05D006281 3.5e-20 102.4 70 71.4
Sc04g0003930 Simmondsia chinensis HOM05D005388 ORTHO05D006281 3.5e-20 102.4 145 43.4
Medtr1g007170 Medicago truncatula HOM05D005388 ORTHO05D006281 4.5e-20 102.1 127 50.4
Sed0023635 Sechium edule HOM05D005388 ORTHO05D006281 4.5e-20 102.1 142 46.5
TPR.G17170 Trifolium pratense HOM05D005388 ORTHO05D006281 4.5e-20 102.1 152 44.7
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 4.5e-20 102.1 74 67.6
Duzib235G1331 Durio zibethinus HOM05D005388 ORTHO05D006281 5.9e-20 101.7 144 45.1
MD10G1330400 Malus domestica HOM05D005388 ORTHO05D006281 5.9e-20 101.7 149 43.6
ClCG09G000980 Citrullus lanatus HOM05D005388 ORTHO05D006281 7.8e-20 101.3 144 42.4
FAN04G2939 Fragaria x ananassa HOM05D005388 ORTHO05D006281 7.8e-20 101.3 156 43.6
vmacro03650 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 7.8e-20 101.3 144 45.1
ECA234G3218 Erigeron canadensis HOM05D005388 ORTHO05D006281 1.0e-19 100.9 63 74.6
HanXRQChr12g0373991 Helianthus annuus HOM05D005388 ORTHO05D006281 1.0e-19 100.9 62 72.6
HanXRQChr12g0374001 Helianthus annuus HOM05D005388 ORTHO05D006281 1.0e-19 100.9 62 72.6
TAR629G3434 Trochodendron aralioides HOM05D005388 ORTHO05D006281 1.0e-19 100.9 158 44.9
FAN11G2435 Fragaria x ananassa HOM05D000566 ORTHO05D000686 1.3e-19 100.5 116 50.9
CiPaw.09G101500 Carya illinoinensis HOM05D005388 ORTHO05D006281 1.7e-19 100.1 100 57.0
Nitab4.5_0000143g0400 Nicotiana tabacum HOM05D005388 ORTHO05D006281 1.7e-19 100.1 60 76.7
VMungo1383G1280 Vigna mungo HOM05D005388 ORTHO05D006281 2.3e-19 99.8 61 77.0
BcaB07g32784 Brassica carinata HOM05D005388 ORTHO05D006281 3.8e-19 99.0 112 51.8
AL2G29970 Arabidopsis lyrata HOM05D005388 ORTHO05D006281 5.0e-19 98.6 75 66.7
Cpa.g.sc89.56 Carica papaya HOM05D005388 ORTHO05D006281 5.0e-19 98.6 60 75.0
Lj1g0004963 Lotus japonicus HOM05D005388 ORTHO05D006281 5.0e-19 98.6 132 46.2
Sabra16G0117800 Salix brachista HOM05D005388 ORTHO05D006281 5.0e-19 98.6 148 43.2
Ciclev10016118m.g Citrus clementina HOM05D005388 ORTHO05D006281 6.6e-19 98.2 135 46.7
Glyma.19G115900 Glycine max HOM05D005388 ORTHO05D006281 6.6e-19 98.2 155 44.5
QL03p029835 Quercus lobata HOM05D005388 ORTHO05D006281 8.6e-19 97.8 156 43.6
Glyma.16G037200 Glycine max HOM05D005388 ORTHO05D006281 1.5e-18 97.1 161 41.6
TAR624G0708 Trochodendron aralioides HOM05D005388 ORTHO05D006281 1.5e-18 97.1 148 44.6
HPP92_008146 Vanilla planifolia HOM05D005388 ORTHO05D006281 1.5e-18 97.1 99 54.5
AT1G31220 Arabidopsis thaliana HOM05D005388 ORTHO05D006281 1.9e-18 96.7 71 67.6
CsaV3_7G034450 Cucumis sativus L. HOM05D005388 ORTHO05D006281 1.9e-18 96.7 62 72.6
AL1G49260 Arabidopsis lyrata HOM05D005388 ORTHO05D006281 2.5e-18 96.3 101 54.5
CANSAT56G1966 Cannabis sativa HOM05D005388 ORTHO05D006281 2.5e-18 96.3 139 48.9
Nitab4.5_0001198g0130 Nicotiana tabacum HOM05D005388 ORTHO05D006281 2.5e-18 96.3 107 51.4
Rhsim04G0088400 Rhododendron simsii HOM05D005388 ORTHO05D006281 2.5e-18 96.3 126 46.8
Sp1g27030 Schrenkiella parvula HOM05D005388 ORTHO05D006281 2.5e-18 96.3 127 46.5
THA.LOC104812711 Tarenaya hassleriana HOM05D005388 ORTHO05D006281 3.3e-18 95.9 62 72.6
Zm00001eb082710 Zea mays HOM05D005388 ORTHO05D006281 3.3e-18 95.9 62 74.2
Carub.0001s2962 Capsella rubella HOM05D005388 ORTHO05D006281 4.3e-18 95.5 126 47.6
AUR62009518 Chenopodium quinoa HOM05D005388 ORTHO05D006281 4.3e-18 95.5 148 40.5
Ca_19224_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 4.3e-18 95.5 70 67.1
AUR62034770 Chenopodium quinoa HOM05D005388 ORTHO05D006281 5.6e-18 95.1 148 41.9
Potri.012G107500 Populus trichocarpa HOM05D005388 ORTHO05D006281 7.3e-18 94.7 121 48.8
QL10p003604 Quercus lobata HOM05D005388 ORTHO05D006281 7.3e-18 94.7 145 42.8
CARHR030700 Cardamine hirsuta HOM05D005388 ORTHO05D006281 9.5e-18 94.4 75 64.0
DCAR_027849 Daucus carota HOM05D005388 ORTHO05D006281 9.5e-18 94.4 61 72.1
MD03G1153200 Malus domestica HOM05D005388 ORTHO05D006281 9.5e-18 94.4 149 45.6
Nn1g07342 Nelumbo nucifera HOM05D005388 ORTHO05D006281 9.5e-18 94.4 153 41.2
BolC5t31778H Brassica oleracea HOM05D005388 ORTHO05D006281 1.2e-17 94.0 115 47.0
Thhalv10008369m.g Eutrema salsugineum HOM05D005388 ORTHO05D006281 1.2e-17 94.0 73 63.0
Peaxi162Scf00558g00317 Petunia axillaris HOM05D005388 ORTHO05D006281 1.6e-17 93.6 105 50.5
Aqoxy7G03349 Aquilegia oxysepala HOM05D005388 ORTHO05D006281 2.8e-17 92.8 114 50.0
BraA09t39033Z Brassica rapa HOM05D005388 ORTHO05D006281 3.6e-17 92.4 99 50.5
A09p35020 Brassica napus HOM05D005388 ORTHO05D006281 4.7e-17 92.0 115 47.8
PGR044G2560 Punica granatum HOM05D005388 ORTHO05D006281 4.7e-17 92.0 152 42.8
Manes.03G134302 Manihot esculenta HOM05D005388 ORTHO05D006281 8.0e-17 91.3 71 62.0
TPR.G24522 Trifolium pratense HOM05D005388 ORTHO05D006281 1.0e-16 90.9 55 80.0
BcaC05g27152 Brassica carinata HOM05D005388 ORTHO05D006281 1.4e-16 90.5 115 46.1
C05p30410 Brassica napus HOM05D005388 ORTHO05D006281 1.4e-16 90.5 115 46.1
Eucgr.A00642 Eucalyptus grandis HOM05D005388 ORTHO05D006281 1.4e-16 90.5 62 67.7
SalBow8G2877 Salvia bowleyana HOM05D005388 ORTHO05D006281 1.4e-16 90.5 66 68.2
Ah.00g000100 Amaranthus hybridus HOM05D005388 ORTHO05D006281 1.8e-16 90.1 144 39.6
vmacro03839 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 1.8e-16 90.1 147 43.5
EL10Ac5g11305 Beta vulgaris HOM05D005388 ORTHO05D006281 3.0e-16 89.4 148 39.2
ATR0561G011 Amborella trichopoda HOM05D005388 ORTHO05D006281 4.0e-16 89.0 60 66.7
Os08g0500900 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 4.0e-16 89.0 62 67.7
Os05g0270800 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 2.6e-15 86.3 62 66.1
Haze_06907 Corylus avellana HOM05D005388 ORTHO05D006281 4.4e-15 85.5 192 33.3
Aa31LG9G16020 Aethionema arabicum HOM05D005388 ORTHO05D006281 8.3e-14 81.3 55 72.7
CDE04G0494 Ceratophyllum demersum HOM05D005388 ORTHO05D006281 2.4e-13 79.7 170 35.9
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 2.4e-13 79.7 65 58.5
SMO353G0366 Selaginella moellendorffii HOM05D005388 ORTHO05D006281 4.1e-13 79.0 62 61.3
CBR_g45412 Chara braunii HOM05D005388 ORTHO05D006281 1.2e-12 77.4 72 52.8
Haze_05515 Corylus avellana HOM05D005388 ORTHO05D006281 4.6e-12 75.5 142 40.8
Rhsim04G0092900 Rhododendron simsii HOM05D005388 ORTHO05D006281 3.0e-11 72.8 165 36.4
AagrBONN_evm.TU.Sc2ySwM_369.551 Anthoceros agrestis HOM05D005388 ORTHO05D006281 6.6e-11 71.6 59 55.9
Mapoly0084s0080 Marchantia polymorpha HOM05D005388 ORTHO05D006281 8.6e-11 71.2 59 55.9
Rhsim04G0089100 Rhododendron simsii HOM05D005388 ORTHO05D006281 1.1e-10 70.9 103 47.6
MCO11G941 Micromonas commoda HOM05D005388 ORTHO05D006281 6.2e-09 65.1 65 49.2
Cre12.g550700 Chlamydomonas reinhardtii HOM05D005388 ORTHO05D006281 2.3e-08 63.2 58 50.0
Pp3c13_14970 Physcomitrium patens HOM05D005388 ORTHO05D006281 2.3e-08 63.2 59 50.8
DCAR_016082 Daucus carota HOM05D005388 ORTHO05D006281 3.7e-06 55.8 38 73.7


User provided reference genes

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