Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 7.0e-93 344.0 178 100.0
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 9.9e-71 270.4 176 79.0
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 9.9e-71 270.4 176 79.5
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.2e-69 265.4 176 77.8
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 4.8e-57 224.9 177 66.1
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.2e-55 220.3 177 66.1
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 3.4e-55 218.8 176 66.5
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 4.9e-54 214.9 177 65.0
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.4e-53 213.4 177 63.3
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.4e-53 213.4 156 69.9
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.4e-53 212.6 177 63.3
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 2.1e-52 209.5 175 62.3
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 3.5e-52 208.8 226 55.3
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 6.0e-52 208.0 173 61.8
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 3.0e-51 205.7 182 59.9
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 3.0e-51 205.7 219 55.3
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 8.7e-51 204.1 134 78.4
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.5e-50 203.4 177 61.6
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.5e-50 202.6 227 53.3
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 5.6e-50 201.4 177 60.5
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.3e-49 200.3 177 61.0
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 2.8e-49 199.1 177 59.9
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 4.8e-49 198.4 177 61.0
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 6.2e-49 198.0 173 63.0
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 1.4e-48 196.8 176 61.9
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.8e-48 196.4 174 58.6
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 5.3e-48 194.9 172 59.3
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 6.9e-48 194.5 177 57.1
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 2.6e-47 192.6 177 57.6
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 2.6e-47 192.6 172 58.7
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.4e-47 192.2 158 67.1
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 5.8e-47 191.4 172 59.3
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 5.8e-47 191.4 172 58.1
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 7.6e-47 191.0 166 62.0
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 2.9e-46 189.1 172 59.9
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.9e-46 189.1 172 58.7
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.9e-46 189.1 170 59.4
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 7.1e-45 184.5 164 58.5
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 7.1e-45 184.5 164 58.5
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 7.1e-45 184.5 175 55.4
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 7.1e-45 184.5 172 59.9
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.2e-44 183.7 175 57.1
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.1e-44 183.0 164 60.4
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 2.7e-44 182.6 164 58.5
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 4.6e-44 181.8 176 55.1
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 6.0e-44 181.4 167 53.9
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.0e-43 180.6 167 53.9
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 2.3e-43 179.5 177 53.7
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 5.1e-43 178.3 176 54.5
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 5.1e-43 178.3 175 54.3
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 6.7e-43 177.9 168 56.5
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 8.7e-43 177.6 175 53.7
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 1.1e-42 177.2 173 56.1
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 1.5e-42 176.8 178 52.2
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 1.5e-42 176.8 178 52.2
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.5e-42 176.8 169 57.4
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.9e-42 176.4 173 55.5
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 2.5e-42 176.0 166 55.4
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 5.6e-42 174.9 167 55.7
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 7.4e-42 174.5 177 54.2
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 9.6e-42 174.1 175 52.6
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 9.6e-42 174.1 175 52.6
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.3e-41 173.7 175 53.7
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 4.8e-41 171.8 167 54.5
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 6.2e-41 171.4 177 52.0
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 1.4e-40 170.2 175 52.0
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.8e-40 169.9 175 52.0
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 4.0e-40 168.7 175 50.9
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 4.0e-40 168.7 175 52.6
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 4.0e-40 168.7 174 50.6
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 6.9e-40 167.9 155 60.0
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 6.9e-40 167.9 155 60.0
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 6.9e-40 167.9 202 49.0
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 6.9e-40 167.9 158 58.9
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 6.9e-40 167.9 155 57.4
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 9.0e-40 167.5 155 59.4
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 1.5e-39 166.8 175 52.0
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 3.4e-39 165.6 180 51.1
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 3.4e-39 165.6 167 52.1
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 5.8e-39 164.9 173 51.4
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 7.6e-39 164.5 181 52.5
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.0e-38 164.1 173 52.0
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.0e-38 164.1 176 50.6
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 1.3e-38 163.7 167 50.9
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 1.7e-38 163.3 178 53.4
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 1.7e-38 163.3 154 58.4
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 3.8e-38 162.2 162 53.1
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 4.9e-38 161.8 173 53.8
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 8.4e-38 161.0 176 50.6
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 1.1e-37 160.6 172 52.3
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 1.4e-37 160.2 200 46.0
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 1.9e-37 159.8 167 50.9
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 2.5e-37 159.5 131 61.1
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 3.2e-37 159.1 164 53.7
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 9.3e-37 157.5 154 54.5
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 9.3e-37 157.5 175 51.4
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 9.3e-37 157.5 153 56.9
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 1.2e-36 157.1 140 57.1
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 6.0e-36 154.8 164 47.6
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 7.9e-36 154.5 151 55.0
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 7.9e-36 154.5 141 62.4
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 1.8e-35 153.3 172 49.4
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 2.3e-35 152.9 173 51.4
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 6.7e-35 151.4 167 52.7
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 6.7e-35 151.4 167 52.7
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 8.7e-35 151.0 165 51.5
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 1.9e-34 149.8 154 52.6
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 1.9e-34 149.8 131 59.5
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 1.3e-33 147.1 152 52.0
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.3e-33 147.1 172 49.4
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.6e-33 146.7 160 52.5
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 3.7e-33 145.6 171 46.8
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 4.8e-33 145.2 167 49.7
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 4.8e-33 145.2 154 53.2
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 6.3e-33 144.8 176 49.4
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 5.3e-32 141.7 156 50.6
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 6.9e-32 141.4 129 61.2
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.5e-31 140.2 175 45.7
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 2.6e-31 139.4 175 45.1
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 4.5e-31 138.7 179 48.0
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 2.9e-30 136.0 138 55.8
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.9e-30 136.0 154 51.3
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 1.4e-29 133.7 186 45.7
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 1.6e-28 130.2 138 52.9
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 2.1e-28 129.8 171 43.3
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.7e-28 129.4 161 46.6
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 6.1e-28 128.3 158 46.8
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 3.9e-27 125.6 138 53.6
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 7.4e-26 121.3 176 43.8
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 8.2e-25 117.9 147 49.0
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 4.1e-24 115.5 272 31.2
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 8.5e-22 107.8 93 52.7
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 2.7e-20 102.8 91 56.0
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.7e-20 102.8 73 57.5
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 8.8e-19 97.8 115 53.9
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 2.0e-18 96.7 84 61.9
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 9.7e-18 94.4 77 67.5
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 8.2e-17 91.3 114 50.0
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.8e-16 90.1 82 61.0
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 3.1e-16 89.4 110 50.9
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 4.1e-16 89.0 85 60.0
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 4.1e-16 89.0 168 37.5
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 5.3e-16 88.6 91 54.9
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 9.1e-16 87.8 85 61.2
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.5e-15 87.0 82 58.5
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 5.5e-13 78.6 139 37.4
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 5.5e-13 78.6 175 32.6
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 2.0e-10 70.1 62 58.1
Cre09.g387504 Chlamydomonas reinhardtii HOM05D004607 ORTHO05D005836 2.0e-10 70.1 131 35.9
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 9.7e-10 67.8 69 56.5
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 9.7e-10 67.8 69 56.5
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.7e-09 65.9 51 74.5
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 2.9e-06 56.2 122 32.8


User provided reference genes

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