Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 6.6e-268 926.8 463 100.0
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 2.5e-235 818.5 463 86.4
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 7.6e-232 807.0 463 84.0
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 2.9e-231 805.1 463 85.3
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 5.1e-228 794.3 463 83.8
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 2.5e-222 775.4 483 79.7
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 1.6e-221 772.7 463 81.2
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 4.1e-217 758.1 463 80.8
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 3.7e-210 734.9 490 74.3
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 4.1e-209 731.5 478 74.7
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.5e-208 729.6 485 74.0
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.7e-207 726.1 479 73.9
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 3.2e-206 721.8 473 73.6
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 3.2e-206 721.8 474 74.3
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 4.2e-206 721.5 473 73.8
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 4.2e-206 721.5 473 73.6
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 5.5e-206 721.1 476 73.1
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 2.1e-205 719.2 483 72.5
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 3.6e-205 718.4 478 73.4
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 7.9e-205 717.2 476 73.9
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 7.9e-205 717.2 473 73.4
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.8e-204 716.1 478 73.6
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 6.7e-204 714.1 477 74.0
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 6.7e-204 714.1 479 72.2
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 8.8e-204 713.8 479 72.2
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 7.4e-203 710.7 477 72.3
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 7.4e-203 710.7 477 72.3
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.3e-202 709.9 476 72.7
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 2.2e-202 709.1 478 72.0
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.8e-202 708.8 476 73.3
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.8e-202 708.8 477 71.9
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 2.8e-202 708.8 463 74.3
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 6.3e-202 707.6 474 72.8
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.8e-201 706.1 479 73.1
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 4.1e-201 704.9 475 72.4
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 1.2e-200 703.4 477 71.3
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.6e-200 702.2 478 71.5
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 2.6e-200 702.2 479 71.6
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.5e-200 701.4 481 71.5
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 5.9e-200 701.0 477 71.1
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 5.9e-200 701.0 481 71.5
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 7.7e-200 700.7 477 71.3
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.3e-199 699.9 505 68.1
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 2.9e-199 698.7 474 72.4
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 2.9e-199 698.7 481 70.7
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.8e-199 698.4 483 70.4
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 5.0e-199 698.0 479 71.4
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 5.0e-199 698.0 476 71.8
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 5.0e-199 698.0 475 71.6
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 6.5e-199 697.6 477 71.5
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 6.5e-199 697.6 479 72.0
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 3.2e-198 695.3 476 71.6
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 5.5e-198 694.5 476 71.2
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 2.1e-197 692.6 483 70.8
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 2.7e-197 692.2 475 70.7
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 2.7e-197 692.2 479 69.3
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.7e-197 692.2 470 71.7
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 4.7e-197 691.4 475 70.7
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 8.0e-197 690.6 483 70.8
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.4e-196 689.9 466 73.6
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 6.7e-196 687.6 495 69.3
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 6.7e-196 687.6 475 70.3
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 6.7e-196 687.6 485 70.1
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 6.7e-196 687.6 475 70.3
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 8.8e-196 687.2 476 70.6
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 1.1e-195 686.8 480 69.8
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.5e-195 686.4 471 71.5
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 7.5e-195 684.1 480 69.6
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 3.7e-194 681.8 479 69.5
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 3.7e-194 681.8 480 67.7
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 4.8e-194 681.4 475 70.3
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 6.3e-194 681.0 442 74.0
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 8.2e-194 680.6 475 69.9
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.4e-193 679.9 474 70.9
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.6e-192 676.4 481 69.4
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.5e-190 669.8 473 68.7
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 3.2e-190 668.7 476 69.1
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 3.2e-190 668.7 517 66.2
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 7.2e-190 667.5 469 69.3
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.6e-189 666.4 484 68.4
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 2.7e-189 665.6 488 69.1
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 4.0e-188 661.8 479 68.3
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.2e-187 660.2 507 64.5
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.5e-187 659.8 476 68.3
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 2.8e-186 655.6 474 68.1
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 8.3e-186 654.1 456 70.2
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 1.4e-185 653.3 487 68.4
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 2.4e-185 652.5 473 66.4
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 4.1e-185 651.7 474 67.7
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 7.0e-185 651.0 474 67.5
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 7.0e-185 651.0 474 67.5
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.6e-184 649.8 474 67.7
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 2.7e-184 649.0 474 66.9
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 2.7e-184 649.0 474 67.3
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 4.5e-184 648.3 415 74.2
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 4.5e-184 648.3 472 66.1
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.0e-183 647.1 471 66.5
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.7e-183 646.4 458 70.1
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 3.8e-183 645.2 476 66.8
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 2.1e-181 639.4 498 64.7
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 2.7e-181 639.0 432 71.8
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 3.6e-181 638.6 486 65.0
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.3e-178 630.2 569 56.9
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.8e-177 626.3 490 63.7
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.2e-172 608.2 415 71.3
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.5e-171 606.7 552 59.2
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 6.4e-170 601.3 429 68.5
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 6.4e-170 601.3 477 63.7
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.4e-169 600.1 513 59.6
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 2.7e-168 595.9 474 62.9
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.5e-168 595.5 487 61.2
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.8e-164 583.2 469 62.3
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 5.6e-158 561.6 476 56.7
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 2.8e-157 559.3 486 58.4
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 6.8e-156 554.7 423 66.4
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 3.2e-145 519.2 413 64.2
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 4.2e-137 492.3 357 68.3
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 7.3e-134 481.5 492 53.9
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 6.0e-128 461.8 299 72.6
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.8e-101 373.2 598 39.0
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 4.5e-99 365.9 253 67.6
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 2.9e-90 336.7 523 40.9
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 8.8e-87 325.1 256 63.3
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.1e-80 303.9 210 69.0
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 8.0e-80 302.0 212 72.2
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.3e-78 296.6 182 70.9
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 3.8e-74 283.1 256 54.7
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.9e-73 280.8 538 35.7
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 6.1e-72 275.8 381 45.4
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 5.7e-62 242.7 181 71.3
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 4.1e-60 236.5 174 61.5
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.0e-59 234.2 261 49.0
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 5.7e-54 216.1 489 32.7
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 1.9e-49 201.1 423 35.9
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.0e-47 195.3 172 57.0
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.0e-46 191.0 373 34.9
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.7e-45 186.8 449 30.5
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.1e-44 183.3 446 30.0
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.5e-35 153.7 212 45.3
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.3e-34 151.8 220 41.4
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.3e-18 97.8 132 43.2
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.5e-17 95.1 176 40.9
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 2.4e-12 77.8 61 65.6
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 3.2e-12 77.4 65 63.1
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.7e-10 69.7 65 58.5
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 1.5e-09 68.6 62 53.2
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 2.8e-08 64.3 70 52.9
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 4.8e-08 63.5 58 56.9
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 1.4e-07 62.0 69 50.7
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 4.0e-07 60.5 68 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.5e-06 58.5 83 45.8


User provided reference genes

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