Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 2.8e-221 771.9 481 100.0
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 6.9e-127 458.4 406 66.5
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 1.8e-119 433.7 404 63.6
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 3.2e-116 422.9 497 65.4
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.0e-109 401.4 414 62.6
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.0e-109 401.4 413 62.2
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 3.8e-109 399.4 403 61.8
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 5.0e-109 399.1 408 61.5
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 7.2e-108 395.2 410 60.2
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 7.4e-105 385.2 414 59.4
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 1.1e-103 381.3 411 58.4
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 2.6e-102 376.7 404 58.7
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 7.7e-102 375.2 421 58.4
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 3.8e-101 372.9 410 57.6
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 6.5e-101 372.1 421 55.8
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 7.2e-100 368.6 416 57.7
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.7e-99 366.7 322 67.1
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 2.0e-97 360.5 348 64.1
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 2.6e-97 360.1 343 65.6
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 3.3e-97 359.8 418 56.9
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 9.7e-97 358.2 406 58.4
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 9.7e-97 358.2 424 51.7
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 9.7e-97 358.2 435 52.6
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 1.8e-95 354.0 407 56.8
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.4e-95 353.6 411 56.7
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 9.1e-95 351.7 413 56.4
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.0e-94 350.5 321 66.7
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 4.5e-94 349.4 412 54.1
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 1.7e-93 347.4 415 56.9
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 5.0e-93 345.9 413 55.9
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 4.2e-92 342.8 417 54.7
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 5.5e-92 342.4 414 54.3
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 5.2e-90 335.9 410 53.7
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 8.8e-90 335.1 406 54.7
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 4.4e-89 332.8 400 56.5
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 1.7e-88 330.9 417 53.0
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 2.2e-88 330.5 416 52.6
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 6.3e-88 328.9 429 50.1
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 1.8e-87 327.4 408 54.7
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 7.0e-87 325.5 383 57.2
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 9.1e-87 325.1 406 53.9
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.2e-86 324.7 196 80.6
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 7.7e-86 322.0 425 52.7
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 1.3e-85 321.2 422 50.2
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 1.3e-85 321.2 410 53.2
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 2.9e-85 320.1 408 54.2
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 3.8e-85 319.7 358 58.1
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 5.0e-85 319.3 327 62.7
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 8.5e-85 318.5 428 49.8
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 1.5e-84 317.8 415 52.0
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 1.9e-84 317.4 349 59.0
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 3.2e-84 316.6 443 48.5
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 3.2e-84 316.6 427 48.7
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 3.2e-84 316.6 345 59.1
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 1.2e-83 314.7 416 53.1
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 1.6e-83 314.3 439 48.5
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 2.1e-83 313.9 414 53.6
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 8.0e-83 312.0 448 48.9
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 1.0e-82 311.6 430 48.8
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.4e-82 311.2 431 48.7
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 2.3e-82 310.5 392 53.8
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 6.8e-82 308.9 413 48.4
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 8.8e-82 308.5 407 55.3
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.5e-81 307.8 414 51.4
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.4e-81 306.2 448 50.0
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.7e-81 305.8 424 51.9
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 7.5e-81 305.4 409 48.9
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 8.3e-80 302.0 388 48.7
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 8.3e-80 302.0 436 47.0
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 8.3e-80 302.0 403 51.1
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.8e-79 300.8 448 50.2
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 2.4e-79 300.4 409 47.9
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 4.1e-79 299.7 443 47.9
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 5.4e-79 299.3 400 50.5
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 5.4e-79 299.3 409 47.9
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 9.1e-79 298.5 411 51.1
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 1.2e-78 298.1 451 46.6
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 2.7e-78 297.0 319 57.1
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 2.7e-78 297.0 305 58.7
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 4.5e-78 296.2 375 49.6
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 3.8e-77 293.1 453 45.9
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 3.8e-77 293.1 317 55.5
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 3.8e-77 293.1 428 48.6
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 1.5e-76 291.2 423 48.5
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 7.2e-76 288.9 388 55.2
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.2e-75 288.1 417 47.0
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 3.6e-75 286.6 433 48.3
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 1.8e-74 284.3 382 49.2
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 5.2e-74 282.7 436 47.9
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 8.9e-74 282.0 424 46.9
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.0e-73 280.8 420 45.0
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 4.4e-73 279.6 399 48.6
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 7.5e-73 278.9 414 46.9
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 9.8e-73 278.5 416 44.7
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 9.8e-73 278.5 337 51.0
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 8.3e-72 275.4 430 47.4
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 3.2e-71 273.5 413 47.2
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 4.6e-70 269.6 238 58.8
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.0e-69 268.5 300 53.0
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.7e-69 267.7 398 48.5
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 8.0e-67 258.8 398 45.0
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.3e-66 257.3 414 44.7
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 2.3e-66 257.3 327 55.7
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 2.0e-65 254.2 305 52.8
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 6.4e-64 249.2 327 48.0
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 6.2e-59 232.6 166 66.3
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 1.6e-54 218.0 175 60.6
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 1.6e-54 218.0 175 60.6
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 9.5e-52 208.8 138 70.3
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 6.2e-51 206.1 597 35.3
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 1.9e-47 194.5 318 50.6
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 1.7e-40 171.4 137 61.3
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 2.7e-38 164.1 123 65.0
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 3.5e-38 163.7 280 51.8
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.3e-37 161.8 105 71.4
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 3.4e-33 147.1 88 80.7
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.5e-30 137.1 87 75.9
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.7e-29 134.8 320 37.8
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 9.0e-26 122.5 170 38.2
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 1.1e-23 115.5 320 30.3
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 6.0e-22 109.8 143 35.7
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 8.7e-21 105.9 64 78.1
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 2.1e-19 101.3 63 79.4
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 2.4e-18 97.8 62 77.4
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 5.3e-18 96.7 62 79.0
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.3e-16 92.0 88 60.2
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 1.9e-15 88.2 273 39.2
Sopen01g041600 Solanum pennellii HOM05D002505 ORTHO05D006559 1.9e-15 88.2 177 38.4
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 2.1e-14 84.7 81 49.4
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 6.3e-11 73.2 244 33.6
QL04p094472 Quercus lobata HOM05D002505 ORTHO05D006559 2.7e-06 57.8 31 77.4


User provided reference genes

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