Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 6.3e-224 780.4 382 100.0
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.1e-178 630.2 384 82.0
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 7.1e-167 590.9 383 77.5
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 2.3e-165 585.9 379 74.9
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 6.2e-163 577.8 379 74.9
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.1e-163 577.4 380 73.4
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 8.1e-163 577.4 403 72.2
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.1e-162 577.0 379 75.2
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.5e-161 573.2 380 73.4
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 3.4e-161 572.0 379 74.1
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 4.4e-161 571.6 379 74.7
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 1.7e-160 569.7 379 73.9
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 3.8e-160 568.5 333 80.8
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.4e-159 566.6 379 73.4
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 1.9e-159 566.2 378 73.5
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 1.2e-158 563.5 381 72.4
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 3.5e-158 562.0 379 73.6
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 6.0e-158 561.2 379 73.4
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 1.0e-157 560.5 383 72.6
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.7e-157 559.7 379 72.8
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.3e-157 559.3 380 73.2
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 3.9e-157 558.5 380 72.9
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.1e-156 557.0 381 73.2
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.1e-156 557.0 383 72.3
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 1.5e-156 556.6 382 72.0
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 1.9e-156 556.2 382 72.5
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 2.5e-156 555.8 381 71.7
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 7.3e-156 554.3 381 71.7
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 7.3e-156 554.3 375 71.2
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 1.6e-155 553.1 372 74.5
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.6e-155 553.1 318 81.8
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 1.6e-155 553.1 404 68.6
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 2.1e-155 552.7 381 71.9
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 2.8e-155 552.4 383 71.8
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 3.6e-155 552.0 321 80.4
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 3.6e-155 552.0 380 71.3
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 3.6e-155 552.0 392 71.4
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 2.4e-154 549.3 382 71.5
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 2.4e-154 549.3 350 75.1
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 3.1e-154 548.9 379 71.0
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.0e-154 548.5 380 71.3
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.3e-154 548.1 379 71.0
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 9.0e-154 547.4 382 72.3
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.5e-153 546.6 376 71.5
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 2.0e-153 546.2 379 71.8
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 3.4e-153 545.4 383 72.1
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 4.5e-153 545.0 381 70.6
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 4.5e-153 545.0 380 70.0
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 7.6e-153 544.3 379 70.4
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 7.6e-153 544.3 379 69.9
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 9.9e-153 543.9 379 70.4
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 9.9e-153 543.9 393 68.4
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 9.9e-153 543.9 382 71.2
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.3e-152 543.5 381 71.1
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 1.7e-152 543.1 380 70.0
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 2.2e-152 542.7 318 79.6
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 2.9e-152 542.3 371 72.5
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 3.8e-152 542.0 322 80.7
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 3.8e-152 542.0 381 70.1
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.9e-151 539.7 379 70.7
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.9e-151 539.7 359 73.3
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 7.1e-151 537.7 384 68.5
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 7.1e-151 537.7 324 78.7
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.6e-150 536.6 382 68.8
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 1.6e-150 536.6 380 69.7
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 1.6e-150 536.6 399 69.4
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.1e-150 536.2 378 68.8
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.7e-150 535.8 380 70.5
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 4.6e-150 535.0 352 73.3
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 4.6e-150 535.0 380 67.9
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 4.6e-150 535.0 391 66.5
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 1.0e-149 533.9 379 69.1
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.8e-149 533.1 379 69.4
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 1.9e-148 529.6 381 69.6
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.9e-148 529.6 319 76.2
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 7.4e-148 527.7 380 67.1
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 7.4e-148 527.7 318 76.4
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 9.6e-148 527.3 315 77.8
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 9.6e-148 527.3 378 68.8
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 9.6e-148 527.3 333 74.2
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 2.8e-147 525.8 382 66.5
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 8.1e-147 524.2 317 77.9
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 8.1e-147 524.2 321 76.6
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 1.8e-146 523.1 380 67.1
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 1.8e-146 523.1 380 67.1
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.8e-146 523.1 307 80.1
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 3.1e-146 522.3 378 68.3
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 3.1e-146 522.3 378 68.3
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 4.0e-146 521.9 378 68.3
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 4.0e-146 521.9 378 68.3
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 6.9e-146 521.2 378 68.3
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 6.9e-146 521.2 321 75.1
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 1.2e-145 520.4 380 66.8
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 3.4e-145 518.8 383 66.3
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.4e-145 518.8 383 68.4
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 4.5e-145 518.5 395 66.3
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 4.5e-145 518.5 380 70.8
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 7.6e-145 517.7 383 67.6
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.2e-144 516.2 361 70.6
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 6.5e-144 514.6 322 76.1
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 6.5e-144 514.6 379 66.8
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 1.1e-143 513.8 380 66.8
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.4e-143 513.5 379 64.6
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.1e-142 509.6 348 71.0
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 2.1e-142 509.6 320 74.4
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 3.5e-142 508.8 376 70.2
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 7.9e-142 507.7 305 76.1
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 2.3e-141 506.1 363 68.3
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 4.3e-140 501.9 380 64.7
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 5.7e-140 501.5 313 76.0
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 7.4e-140 501.1 379 67.3
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 9.6e-140 500.7 315 72.4
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 8.2e-139 497.7 321 72.0
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 8.2e-139 497.7 387 66.1
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.6e-137 492.7 318 72.3
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 5.8e-137 491.5 323 70.0
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 1.3e-136 490.3 351 70.1
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 1.4e-135 486.9 350 70.3
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 1.9e-135 486.5 348 70.4
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 3.3e-132 475.7 379 63.1
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 2.4e-130 469.5 350 69.1
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.3e-128 463.8 293 72.0
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.2e-128 463.0 325 71.1
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 1.1e-127 460.7 318 67.9
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 2.1e-126 456.4 348 68.1
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 1.4e-125 453.8 326 69.0
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 6.3e-123 444.9 358 65.9
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 2.4e-122 443.0 257 79.4
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 2.4e-122 443.0 257 79.4
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.3e-120 437.2 296 65.2
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 2.9e-120 436.0 385 58.7
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 1.5e-116 423.7 241 83.0
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 2.4e-114 416.4 338 60.4
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 1.2e-113 414.1 318 59.4
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 2.5e-111 406.4 326 65.3
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 2.7e-110 402.9 329 57.1
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 1.0e-109 401.0 258 76.0
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 3.2e-103 379.4 340 54.4
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.6e-102 375.9 233 73.0
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 2.3e-101 373.2 379 51.7
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 4.0e-101 372.5 293 60.8
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 5.2e-101 372.1 249 73.9
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 1.7e-91 340.5 236 73.3
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.4e-90 336.7 233 67.8
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 3.5e-89 332.8 198 78.8
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 3.8e-88 329.3 303 58.1
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.8e-88 329.3 196 78.1
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 3.9e-72 276.2 206 68.9
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 1.2e-70 271.2 348 44.8
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.2e-70 271.2 344 42.4
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 5.8e-68 262.3 299 47.8
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 9.8e-68 261.5 219 61.2
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 2.7e-65 253.4 306 44.8
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 1.5e-63 247.7 301 43.2
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.0e-52 210.7 164 67.1
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.4e-50 203.8 114 82.5
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 2.9e-43 180.3 183 55.2
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 3.0e-40 170.2 347 33.7
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 4.5e-36 156.4 92 82.6
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 4.5e-36 156.4 92 82.6
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 2.2e-35 154.1 131 62.6
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 2.2e-35 154.1 94 80.9
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 4.9e-35 152.9 92 80.4
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 1.9e-34 151.0 129 62.0
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 1.6e-33 147.9 129 60.5
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 6.7e-32 142.5 97 78.4
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 1.4e-26 124.8 66 87.9
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 1.9e-26 124.4 77 77.9
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 2.5e-26 124.0 75 77.3
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 1.2e-25 121.7 329 26.7
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.3e-22 111.7 92 65.2
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 4.8e-22 109.8 131 48.1
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 3.1e-21 107.1 116 50.9
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.2e-20 105.1 63 74.6
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 6.1e-17 92.8 92 53.3
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 2.5e-15 87.4 51 78.4
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 5.7e-15 86.3 244 29.1
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 9.0e-13 79.0 101 46.5
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 7.7e-12 75.9 47 74.5
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 6.5e-11 72.8 41 80.5
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 1.4e-10 71.6 46 69.6
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 1.0e-08 65.5 42 71.4
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.0e-08 65.5 42 71.4
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 4.3e-07 60.1 39 66.7
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 5.7e-07 59.7 33 87.9


User provided reference genes

Program Settings