Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 4.1e-71 271.6 164 100.0
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 2.3e-50 202.6 160 81.2
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 8.6e-45 184.1 149 79.9
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 8.0e-43 177.6 157 74.5
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 3.0e-42 175.6 161 73.9
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 8.9e-42 174.1 157 71.3
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.8e-41 171.4 145 75.2
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.4e-39 166.8 147 74.8
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 3.5e-38 162.2 161 68.9
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 2.3e-37 159.5 160 67.5
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 4.3e-36 155.2 160 66.9
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.6e-35 153.3 160 66.2
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 1.6e-35 153.3 160 63.1
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 2.8e-35 152.5 160 64.4
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.8e-35 152.5 160 65.6
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 3.6e-35 152.1 193 62.2
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 2.3e-34 149.4 160 65.6
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 3.1e-34 149.1 159 64.8
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 6.8e-34 147.9 146 70.5
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 3.4e-33 145.6 152 70.4
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 8.3e-32 141.0 99 91.9
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.4e-31 140.2 146 69.2
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 4.6e-30 135.2 165 62.4
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 2.3e-29 132.9 153 66.0
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.0e-29 131.7 160 61.9
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 5.0e-29 131.7 111 79.3
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 6.6e-29 131.3 160 61.9
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 4.3e-28 128.6 162 58.6
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.2e-27 127.1 154 63.6
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 6.2e-27 124.8 159 62.9
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.8e-26 123.2 101 81.2
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 2.3e-26 122.9 123 68.3
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 6.8e-26 121.3 136 66.2
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 6.8e-26 121.3 131 69.5
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 6.8e-26 121.3 143 63.6
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.2e-25 120.6 183 54.1
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 4.4e-25 118.6 154 60.4
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 5.8e-25 118.2 113 75.2
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 5.8e-25 118.2 101 80.2
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 5.8e-25 118.2 101 80.2
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 5.8e-25 118.2 101 80.2
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 7.5e-25 117.9 153 61.4
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 7.5e-25 117.9 158 59.5
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 7.5e-25 117.9 98 83.7
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 1.3e-24 117.1 126 65.1
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.7e-24 116.7 115 71.3
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 2.2e-24 116.3 157 58.6
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 2.2e-24 116.3 111 75.7
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 2.9e-24 115.9 145 60.7
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 3.7e-24 115.5 137 62.8
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 4.9e-24 115.2 99 79.8
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 6.4e-24 114.8 115 67.0
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 8.3e-24 114.4 100 71.0
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.4e-23 112.8 155 56.1
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 3.2e-23 112.5 120 69.2
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 7.1e-23 111.3 126 65.1
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 9.2e-23 110.9 121 68.6
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 4.6e-22 108.6 99 78.8
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.8e-22 107.8 126 65.9
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.0e-21 107.5 99 77.8
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 1.7e-21 106.7 99 78.8
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.7e-21 106.7 100 75.0
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 2.3e-21 106.3 99 75.8
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.3e-21 106.3 164 52.4
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 3.0e-21 105.9 170 54.1
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 5.1e-21 105.1 126 61.9
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 6.6e-21 104.8 161 53.4
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 1.1e-20 104.0 160 51.9
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.5e-20 103.6 174 52.9
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.5e-20 103.6 183 51.4
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 1.9e-20 103.2 99 75.8
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 2.5e-20 102.8 117 61.5
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 4.3e-20 102.1 149 55.7
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 5.6e-20 101.7 164 51.8
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.2e-19 100.5 88 77.3
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.6e-19 100.1 105 71.4
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.6e-19 100.1 101 72.3
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 1.6e-19 100.1 134 62.7
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 1.6e-19 100.1 134 62.7
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.6e-19 100.1 101 72.3
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.1e-19 99.8 101 72.3
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.8e-19 99.4 127 52.8
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 3.6e-19 99.0 122 59.0
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.6e-19 99.0 130 58.5
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 6.2e-19 98.2 106 72.6
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 1.1e-18 97.4 160 50.6
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.1e-18 97.4 114 66.7
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 1.8e-18 96.7 103 73.8
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 3.1e-18 95.9 103 71.8
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 3.1e-18 95.9 103 71.8
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 4.0e-18 95.5 155 54.2
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 5.2e-18 95.1 103 71.8
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 5.2e-18 95.1 103 70.9
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 6.8e-18 94.7 103 62.1
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 6.8e-18 94.7 103 62.1
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 8.9e-18 94.4 103 71.8
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 8.9e-18 94.4 55 83.6
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.2e-17 94.0 99 64.6
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 1.5e-17 93.6 97 74.2
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.5e-17 93.6 137 52.6
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 4.4e-17 92.0 97 64.9
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 9.9e-17 90.9 101 70.3
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.9e-16 88.6 103 60.2
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 8.4e-16 87.8 166 50.6
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 1.4e-15 87.0 115 66.1
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.9e-15 86.7 119 57.1
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 4.2e-15 85.5 131 48.9
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 7.1e-15 84.7 154 47.4
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.6e-14 83.6 171 46.8
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 2.1e-14 83.2 96 61.5
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 2.1e-14 83.2 92 63.0
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 2.1e-14 83.2 92 63.0
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.1e-14 83.2 119 54.6
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 2.7e-14 82.8 92 63.0
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 6.0e-14 81.6 93 62.4
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 6.0e-14 81.6 92 60.9
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 7.8e-14 81.3 92 68.5
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.3e-13 80.5 99 63.6
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 3.0e-13 79.3 93 61.3
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 3.0e-13 79.3 87 62.1
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 3.0e-13 79.3 93 61.3
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 3.0e-13 79.3 87 62.1
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 3.9e-13 79.0 101 63.4
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 5.1e-13 78.6 141 51.8
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.5e-12 77.0 98 63.3
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 1.9e-12 76.6 95 61.1
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 3.3e-12 75.9 99 61.6
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 3.3e-12 75.9 87 65.5
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 4.3e-12 75.5 150 43.3
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 4.3e-12 75.5 92 64.1
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 5.6e-12 75.1 106 58.5
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.1e-11 73.2 115 57.4
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 2.1e-11 73.2 101 56.4
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 6.2e-11 71.6 130 50.0
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.8e-10 70.1 67 73.1
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.4e-10 69.7 79 64.6
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.0e-10 68.9 67 68.7
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 9.0e-10 67.8 115 56.5
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 9.0e-10 67.8 67 68.7
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 3.4e-09 65.9 100 60.0
Nitab4.5_0010352g0020 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.4e-09 65.9 181 42.5
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 7.6e-09 64.7 119 47.9
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.2e-08 63.2 85 48.2
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 2.9e-08 62.8 124 44.4
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.1e-07 60.8 67 58.2
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.4e-07 60.5 67 64.2
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 1.4e-07 60.5 114 49.1
AagrBONN_evm.TU.Sc2ySwM_228.3972 Anthoceros agrestis HOM05D004577 ORTHO05D005062 1.9e-07 60.1 126 46.0
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 3.2e-07 59.3 129 44.2
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 9.3e-07 57.8 104 51.0
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 1.2e-06 57.4 84 48.8
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 1.6e-06 57.0 119 44.5


User provided reference genes

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