Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 6.0e-129 464.2 228 100.0
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 1.1e-55 220.7 156 67.9
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 4.4e-55 218.8 170 63.5
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 4.4e-55 218.8 170 63.5
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.7e-51 206.8 204 53.4
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 5.5e-50 201.8 156 62.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 4.7e-49 198.7 172 57.0
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.4e-45 187.2 159 59.1
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 3.1e-45 186.0 162 54.3
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.0e-45 184.9 154 59.1
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.0e-45 184.9 154 59.1
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 7.0e-45 184.9 159 57.9
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.1e-45 184.5 154 59.1
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.1e-45 184.5 154 59.1
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 9.1e-45 184.5 162 54.9
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 9.1e-45 184.5 160 54.4
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.6e-44 183.7 161 52.8
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 4.5e-44 182.2 159 56.6
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.2e-43 179.9 175 53.7
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.9e-43 179.5 156 55.8
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.1e-42 177.6 156 56.4
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.5e-42 176.4 175 52.6
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 9.4e-42 174.5 157 55.4
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 9.4e-42 174.5 157 55.4
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.1e-41 173.3 171 52.6
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.7e-41 172.2 157 54.8
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 4.7e-41 172.2 158 52.5
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.0e-40 171.0 157 54.1
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 6.8e-40 168.3 184 48.4
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.5e-39 167.2 155 51.0
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 2.0e-39 166.8 172 50.0
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.4e-39 166.0 156 51.9
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.3e-38 164.1 156 51.3
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.3e-38 164.1 155 51.6
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 2.2e-38 163.3 154 53.9
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 3.7e-38 162.5 161 51.6
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 3.7e-38 162.5 161 51.6
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 4.9e-38 162.2 156 51.9
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 4.9e-38 162.2 191 48.7
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.4e-37 160.6 173 48.6
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 2.4e-37 159.8 156 50.6
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.4e-37 159.8 159 50.9
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 4.1e-37 159.1 173 50.3
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 5.4e-37 158.7 153 51.6
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 9.1e-37 157.9 174 50.0
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.2e-36 157.5 210 42.9
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.6e-36 157.1 158 51.3
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.6e-36 157.1 191 45.5
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.6e-36 157.1 177 48.6
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 2.0e-36 156.8 174 48.9
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 2.0e-36 156.8 154 50.0
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 2.7e-36 156.4 180 46.7
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 2.7e-36 156.4 187 46.0
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.5e-36 156.0 157 51.6
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 4.5e-36 155.6 180 46.7
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 4.5e-36 155.6 180 46.7
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 4.5e-36 155.6 192 46.9
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.5e-36 155.6 158 51.3
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 7.7e-36 154.8 161 50.3
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.0e-35 154.5 180 45.6
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.3e-35 154.1 190 45.8
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.9e-35 152.9 156 50.0
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 2.9e-35 152.9 150 52.0
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 3.8e-35 152.5 158 49.4
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 3.8e-35 152.5 153 50.3
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 3.8e-35 152.5 180 46.1
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 5.0e-35 152.1 162 49.4
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 6.6e-35 151.8 203 44.8
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.1e-34 151.0 158 50.0
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.9e-34 150.2 163 47.2
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 2.5e-34 149.8 146 52.1
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 2.5e-34 149.8 156 49.4
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 2.5e-34 149.8 154 54.5
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.3e-34 149.4 156 47.4
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 4.2e-34 149.1 182 45.1
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 5.5e-34 148.7 156 50.0
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 9.5e-34 147.9 163 49.1
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 9.5e-34 147.9 159 47.8
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 9.5e-34 147.9 164 44.5
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.6e-33 147.1 158 46.2
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 2.8e-33 146.4 159 49.7
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 2.8e-33 146.4 176 43.8
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 6.1e-33 145.2 154 48.7
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 6.1e-33 145.2 155 47.7
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 8.0e-33 144.8 146 51.4
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.8e-32 143.7 156 48.1
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.8e-32 143.7 155 46.5
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 3.0e-32 142.9 166 44.0
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 5.2e-32 142.1 156 47.4
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 5.2e-32 142.1 157 47.1
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 5.2e-32 142.1 156 46.8
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 5.2e-32 142.1 174 46.0
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 8.9e-32 141.4 163 47.2
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 8.9e-32 141.4 180 43.9
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.2e-31 141.0 143 46.9
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.2e-31 141.0 156 46.8
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.2e-31 141.0 182 44.5
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 4.4e-31 139.0 157 47.8
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 5.7e-31 138.7 156 44.2
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 7.5e-31 138.3 203 41.4
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 3.7e-30 136.0 177 47.5
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 6.3e-30 135.2 161 46.6
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 8.3e-30 134.8 143 50.3
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 1.1e-29 134.4 154 45.5
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.1e-29 134.4 156 48.1
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.4e-29 134.0 177 45.8
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.4e-29 134.0 174 46.0
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.2e-29 132.9 171 45.6
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 7.0e-29 131.7 171 45.0
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 4.6e-28 129.0 194 39.7
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 7.8e-28 128.3 155 48.4
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.3e-27 127.5 143 47.6
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.5e-26 124.0 153 43.1
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 6.1e-25 118.6 157 43.3
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 6.1e-25 118.6 121 51.2
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 8.0e-25 118.2 171 39.2
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 4.0e-24 115.9 165 41.2
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.3e-22 110.9 143 41.3
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.4e-21 107.5 160 40.0
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 4.1e-21 105.9 142 43.7
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 9.2e-21 104.8 148 43.2
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 9.2e-21 104.8 102 48.0
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 7.8e-20 101.7 99 53.5
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 3.9e-19 99.4 145 40.0
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.5e-18 97.4 97 52.6
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 8.9e-16 88.2 102 44.1
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 2.2e-14 83.6 114 39.5
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 6.4e-14 82.0 123 35.8
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.0e-12 75.5 92 42.4
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.7e-11 73.9 97 41.2
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.6e-11 72.0 90 43.3
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 6.2e-09 65.5 145 31.0
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.8e-08 63.9 89 40.4
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 3.7e-06 56.2 54 46.3


User provided reference genes

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