Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 3.9e-54 214.5 109 100.0
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.4e-46 189.5 108 88.9
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 3.0e-46 188.3 109 85.3
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 3.9e-46 188.0 106 86.8
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.9e-46 188.0 107 85.0
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 5.2e-46 187.6 109 86.2
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 8.8e-46 186.8 106 85.8
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.1e-45 186.4 106 85.8
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 1.1e-45 186.4 107 85.0
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.5e-45 186.0 105 86.7
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 2.6e-45 185.3 109 83.5
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 3.3e-45 184.9 105 85.7
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 4.4e-45 184.5 107 83.2
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 4.4e-45 184.5 109 85.3
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 5.7e-45 184.1 109 83.5
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 5.7e-45 184.1 107 84.1
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 7.4e-45 183.7 107 83.2
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 7.4e-45 183.7 107 83.2
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 7.4e-45 183.7 106 84.0
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 7.4e-45 183.7 109 83.5
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 7.4e-45 183.7 109 85.3
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 1.3e-44 183.0 107 84.1
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.7e-44 182.6 109 83.5
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.7e-44 182.6 109 82.6
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.7e-44 182.6 106 84.0
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.2e-44 182.2 109 83.5
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 2.2e-44 182.2 107 84.1
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.2e-44 182.2 106 85.8
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.8e-44 181.8 106 84.0
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.8e-44 181.8 106 84.0
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 2.8e-44 181.8 109 83.5
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 2.8e-44 181.8 106 82.1
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 3.7e-44 181.4 106 84.0
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 3.7e-44 181.4 109 81.7
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.7e-44 181.4 109 81.7
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.7e-44 181.4 109 81.7
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.7e-44 181.4 109 81.7
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.7e-44 181.4 109 82.6
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 3.7e-44 181.4 107 82.2
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 3.7e-44 181.4 109 81.7
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 4.8e-44 181.0 107 83.2
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.8e-44 181.0 106 85.8
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 6.3e-44 180.6 106 84.9
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 6.3e-44 180.6 104 85.6
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 6.3e-44 180.6 104 85.6
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 6.3e-44 180.6 108 86.1
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 84.1
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 84.1
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.1e-43 179.9 112 82.1
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 1.8e-43 179.1 104 84.6
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 1.8e-43 179.1 104 84.6
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.8e-43 179.1 106 83.0
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 2.4e-43 178.7 109 80.7
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 2.4e-43 178.7 109 80.7
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 2.4e-43 178.7 104 83.7
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.4e-43 178.7 106 82.1
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 2.4e-43 178.7 106 82.1
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.1e-43 178.3 109 81.7
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 4.1e-43 177.9 109 79.8
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 4.1e-43 177.9 107 80.4
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 4.1e-43 177.9 98 89.8
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 5.3e-43 177.6 102 86.3
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 9.1e-43 176.8 106 82.1
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 9.1e-43 176.8 102 83.3
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.2e-42 176.4 102 84.3
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.2e-42 176.4 108 78.7
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.2e-42 176.4 107 81.3
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 1.2e-42 176.4 109 78.9
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.6e-42 176.0 107 81.3
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.6e-42 176.0 107 81.3
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.6e-42 176.0 98 86.7
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.6e-42 176.0 98 89.8
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 1.6e-42 176.0 106 82.1
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 2.6e-42 175.3 106 80.2
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 2.6e-42 175.3 107 80.4
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 3.5e-42 174.9 109 79.8
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 3.5e-42 174.9 106 80.2
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 4.5e-42 174.5 108 77.8
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 5.9e-42 174.1 107 77.6
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 7.7e-42 173.7 107 79.4
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 7.7e-42 173.7 101 84.2
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.0e-41 173.3 107 79.4
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.0e-41 173.3 101 83.2
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 1.3e-41 172.9 107 80.4
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 2.2e-41 172.2 106 80.2
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.9e-41 171.8 103 81.6
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 3.8e-41 171.4 108 79.6
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 5.0e-41 171.0 98 81.6
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 6.5e-41 170.6 107 78.5
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 6.5e-41 170.6 100 81.0
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 6.5e-41 170.6 109 79.8
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 1.1e-40 169.9 101 82.2
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 2.5e-40 168.7 107 78.5
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 2.5e-40 168.7 98 81.6
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 3.2e-40 168.3 100 80.0
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 3.2e-40 168.3 101 80.2
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 5.5e-40 167.5 109 76.1
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 5.5e-40 167.5 109 76.1
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 5.5e-40 167.5 109 78.9
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 5.5e-40 167.5 101 79.2
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.2e-39 166.4 107 77.6
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.2e-39 166.4 109 77.1
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.2e-39 166.4 98 84.7
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 2.1e-39 165.6 100 79.0
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 4.7e-39 164.5 108 74.1
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 1.0e-38 163.3 107 75.7
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 5.2e-38 161.0 95 85.3
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 8.8e-38 160.2 106 76.4
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 3.3e-37 158.3 109 72.5
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 7.5e-37 157.1 98 77.6
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 9.7e-37 156.8 107 69.2
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 2.8e-36 155.2 107 68.2
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 6.3e-36 154.1 101 77.2
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 1.1e-35 153.3 110 70.9
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 2.4e-35 152.1 108 69.4
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 3.1e-35 151.8 108 68.5
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 5.3e-35 151.0 108 66.7
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 7.0e-35 150.6 108 68.5
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 7.0e-35 150.6 107 69.2
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 7.0e-35 150.6 97 77.3
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 1.6e-34 149.4 108 67.6
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 1.6e-34 149.4 108 67.6
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 1.6e-34 149.4 104 70.2
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 2.0e-34 149.1 107 67.3
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 2.7e-34 148.7 108 66.7
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 3.5e-34 148.3 108 65.7
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 3.5e-34 148.3 108 66.7
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 5.9e-34 147.5 106 67.9
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-33 144.8 109 67.0
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-33 144.8 109 67.0
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-33 144.8 109 67.0
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 3.8e-33 144.8 109 67.0
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 3.8e-33 144.8 106 70.8
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.1e-32 143.3 108 65.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 7.2e-32 140.6 85 81.2
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.2e-31 139.8 109 69.7
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 5.7e-29 131.0 94 75.5
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 9.8e-29 130.2 107 64.5
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 2.4e-27 125.6 99 58.6
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 5.4e-27 124.4 66 90.9
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 9.1e-27 123.6 81 71.6
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.1e-24 116.7 96 62.5
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 2.5e-24 115.5 96 62.5
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.5e-24 115.5 91 64.8
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 4.2e-24 114.8 97 62.9
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 5.5e-24 114.4 75 77.3
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.2e-23 113.2 65 81.5
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 4.7e-23 111.3 92 63.0
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 2.3e-22 109.0 96 61.5
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 8.9e-22 107.1 56 89.3
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 3.4e-21 105.1 92 58.7
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.4e-19 99.0 79 65.8
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 1.6e-18 96.3 86 55.8
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.7e-17 92.8 59 79.7
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 3.8e-17 91.7 57 78.9
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 8.6e-17 90.5 56 80.4
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 3.3e-16 88.6 57 78.9
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 3.0e-14 82.0 109 45.9
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 1.3e-12 76.6 86 47.7
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 7.8e-10 67.4 46 78.3
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 7.3e-08 60.8 95 41.1


User provided reference genes

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