Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 4.6e-61 237.7 116 100.0
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 8.0e-13 77.4 78 51.3
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 1.4e-12 76.6 58 62.1
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 2.6e-11 72.4 53 64.2
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 4.4e-11 71.6 76 53.9
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 9.8e-11 70.5 48 68.8
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 4.8e-10 68.2 47 70.2
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 4.8e-10 68.2 47 70.2
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 1.1e-09 67.0 82 42.7
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 1.1e-09 67.0 82 42.7
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 1.4e-09 66.6 73 52.1
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 1.4e-09 66.6 48 64.6
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 1.4e-09 66.6 67 49.3
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 2.4e-09 65.9 46 69.6
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 2.4e-09 65.9 62 54.8
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 2.4e-09 65.9 68 51.5
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 3.1e-09 65.5 46 69.6
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 5.4e-09 64.7 82 41.5
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 5.4e-09 64.7 70 52.9
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 5.4e-09 64.7 70 52.9
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 7.0e-09 64.3 56 53.6
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 7.0e-09 64.3 47 68.1
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 7.0e-09 64.3 48 66.7
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 9.1e-09 63.9 54 57.4
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 9.1e-09 63.9 48 66.7
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 9.1e-09 63.9 44 70.5
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 9.1e-09 63.9 70 51.4
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 1.2e-08 63.5 56 51.8
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 1.2e-08 63.5 68 50.0
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 2.0e-08 62.8 48 60.4
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 2.0e-08 62.8 79 41.8
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 2.0e-08 62.8 59 54.2
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 2.0e-08 62.8 45 64.4
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 2.0e-08 62.8 62 56.5
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 2.0e-08 62.8 61 45.9
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 2.7e-08 62.4 49 57.1
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 2.7e-08 62.4 52 51.9
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 2.7e-08 62.4 60 51.7
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 3.5e-08 62.0 45 64.4
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 3.5e-08 62.0 48 60.4
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 3.5e-08 62.0 76 44.7
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 3.5e-08 62.0 69 50.7
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 3.5e-08 62.0 66 48.5
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 4.5e-08 61.6 49 61.2
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 4.5e-08 61.6 48 60.4
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 4.5e-08 61.6 48 60.4
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 4.5e-08 61.6 47 61.7
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 4.5e-08 61.6 59 54.2
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 4.5e-08 61.6 52 51.9
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 4.5e-08 61.6 57 56.1
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 5.9e-08 61.2 46 67.4
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 5.9e-08 61.2 75 44.0
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 7.7e-08 60.8 48 60.4
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 7.7e-08 60.8 48 58.3
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 7.7e-08 60.8 46 65.2
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 1.0e-07 60.5 47 57.4
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 1.3e-07 60.1 68 45.6
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.7e-07 59.7 76 47.4
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 1.7e-07 59.7 46 63.0
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 2.3e-07 59.3 47 57.4
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 2.3e-07 59.3 72 47.2
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 2.3e-07 59.3 46 65.2
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 2.3e-07 59.3 48 58.3
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 2.9e-07 58.9 48 64.6
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 2.9e-07 58.9 47 59.6
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 2.9e-07 58.9 47 59.6
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 3.8e-07 58.5 76 46.1
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 5.0e-07 58.2 62 53.2
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 5.0e-07 58.2 52 50.0
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 8.6e-07 57.4 44 63.6
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 8.6e-07 57.4 50 54.0
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 1.1e-06 57.0 52 48.1
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.5e-06 56.6 47 63.8
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 1.9e-06 56.2 47 55.3
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 2.5e-06 55.8 62 51.6
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 3.3e-06 55.5 52 46.2
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 3.3e-06 55.5 46 58.7
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 4.2e-06 55.1 52 46.2
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 4.2e-06 55.1 44 59.1
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 5.5e-06 54.7 52 48.1
Haze_09525 Corylus avellana HOM05D008666 ORTHO05D009871 5.5e-06 54.7 36 72.2
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 9.5e-06 53.9 48 58.3


User provided reference genes

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