Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 5.1e-157 557.8 295 100.0
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 2.6e-124 449.1 292 80.5
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 1.7e-115 419.9 299 75.3
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 4.9e-115 418.3 299 74.9
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 3.1e-114 415.6 294 75.5
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 5.4e-114 414.8 294 76.2
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 7.0e-114 414.5 294 75.5
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.6e-113 413.3 298 74.8
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.6e-113 413.3 294 75.2
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 2.0e-113 412.9 297 72.7
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 3.5e-113 412.1 299 74.6
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 4.5e-113 411.8 292 74.7
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 5.9e-113 411.4 292 75.0
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 1.0e-112 410.6 300 74.0
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.0e-112 410.6 293 75.8
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 2.3e-112 409.5 297 74.1
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 2.3e-112 409.5 295 71.5
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 2.3e-112 409.5 292 74.7
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 2.5e-111 406.0 297 73.4
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.5e-111 406.0 291 74.2
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.5e-111 406.0 291 74.2
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 4.3e-111 405.2 295 73.6
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 5.6e-111 404.8 291 73.9
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.6e-110 403.3 292 73.6
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 2.1e-110 402.9 292 74.0
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 2.8e-110 402.5 293 74.4
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.6e-110 402.1 292 71.6
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 3.6e-110 402.1 294 72.1
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.7e-110 401.7 294 72.1
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 4.7e-110 401.7 292 73.3
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 4.7e-110 401.7 292 73.3
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.8e-109 399.8 309 70.6
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 1.8e-109 399.8 296 73.3
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 6.8e-109 397.9 297 71.4
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.2e-108 397.1 297 71.7
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 1.5e-108 396.7 294 72.1
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 3.4e-108 395.6 295 73.2
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 3.4e-108 395.6 288 74.0
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 3.4e-108 395.6 297 70.4
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 4.4e-108 395.2 296 70.9
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 4.4e-108 395.2 297 70.4
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 4.4e-108 395.2 297 70.7
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 5.8e-108 394.8 296 72.0
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 5.8e-108 394.8 296 72.0
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.5e-108 394.4 295 71.2
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 9.8e-108 394.0 291 74.2
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 9.8e-108 394.0 294 71.4
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 9.8e-108 394.0 289 73.7
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.3e-107 393.7 300 71.7
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.7e-107 393.3 295 72.9
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.2e-107 392.9 295 71.2
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.2e-107 392.9 295 71.2
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 3.7e-107 392.1 291 70.8
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.7e-107 392.1 298 70.8
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 3.7e-107 392.1 291 72.9
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 4.9e-107 391.7 289 73.0
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 4.9e-107 391.7 265 76.6
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 6.4e-107 391.3 291 71.5
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 1.4e-106 390.2 288 74.7
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 1.9e-106 389.8 298 71.8
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.9e-106 389.8 300 70.3
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 2.4e-106 389.4 288 72.2
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 2.4e-106 389.4 293 71.0
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 3.2e-106 389.0 304 72.7
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 3.2e-106 389.0 294 71.1
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 7.0e-106 387.9 287 72.1
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 9.2e-106 387.5 287 72.8
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 2.0e-105 386.3 287 72.5
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 2.0e-105 386.3 284 72.5
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 2.0e-105 386.3 299 69.9
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 2.7e-105 386.0 294 70.7
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 3.5e-105 385.6 285 72.3
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 4.6e-105 385.2 291 69.8
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 4.6e-105 385.2 291 69.8
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 4.6e-105 385.2 357 63.9
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 6.0e-105 384.8 287 72.1
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 6.0e-105 384.8 291 73.2
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 7.8e-105 384.4 294 70.7
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 1.0e-104 384.0 290 70.7
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.3e-104 382.9 290 71.4
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 2.3e-104 382.9 287 70.7
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 2.3e-104 382.9 288 70.8
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 2.3e-104 382.9 324 65.7
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 3.0e-104 382.5 288 69.8
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 3.0e-104 382.5 288 69.8
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 3.0e-104 382.5 291 69.1
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 5.0e-104 381.7 288 69.8
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 5.0e-104 381.7 295 69.5
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 8.6e-104 380.9 294 70.4
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 1.1e-103 380.6 292 67.8
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.1e-103 380.6 294 70.4
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.1e-103 380.6 291 69.8
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 7.3e-103 377.9 299 71.2
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 1.2e-102 377.1 318 66.7
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.6e-102 376.7 291 71.1
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 3.6e-102 375.6 284 72.2
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 4.7e-102 375.2 280 71.8
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 4.7e-102 375.2 297 67.0
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 4.7e-102 375.2 240 79.2
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 6.2e-102 374.8 288 71.5
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 6.2e-102 374.8 285 70.2
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 8.0e-102 374.4 288 71.5
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 1.1e-101 374.0 285 71.9
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.8e-101 373.2 285 72.3
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 4.0e-101 372.1 268 75.7
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 6.8e-101 371.3 321 64.2
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 8.9e-101 370.9 346 61.3
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 2.6e-100 369.4 294 68.4
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 7.5e-100 367.9 301 68.1
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 9.8e-100 367.5 291 67.0
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 2.2e-99 366.3 341 61.3
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.4e-98 363.6 294 67.7
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 7.0e-98 361.3 354 59.6
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 4.6e-97 358.6 293 66.6
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 6.0e-97 358.2 267 72.3
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 2.3e-96 356.3 229 79.5
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 5.1e-96 355.1 274 68.2
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 5.1e-96 355.1 274 68.2
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 8.6e-96 354.4 292 66.4
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 8.6e-96 354.4 299 66.9
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 1.9e-95 353.2 226 78.3
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 1.2e-94 350.5 292 63.0
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 1.2e-94 350.5 328 61.0
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.4e-93 347.1 293 65.2
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 5.2e-93 345.1 227 78.0
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 9.2e-90 334.3 294 65.0
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 1.1e-85 320.9 231 74.0
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.3e-83 313.9 198 80.8
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.9e-82 310.1 295 60.0
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 9.2e-82 307.8 220 72.7
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 9.2e-82 307.8 228 67.5
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 5.1e-80 302.0 295 56.9
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 5.1e-80 302.0 246 64.2
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 7.3e-79 298.1 229 70.7
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 7.3e-79 298.1 222 66.2
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 4.7e-78 295.4 231 68.8
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 6.2e-78 295.0 201 72.6
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 2.9e-75 286.2 191 77.0
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.7e-72 276.9 263 59.3
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 3.0e-72 276.2 261 59.8
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.3e-62 244.2 185 70.3
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 2.6e-60 236.5 196 63.8
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 9.3e-58 228.0 219 53.9
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 1.3e-56 224.2 225 51.6
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 8.4e-51 204.9 216 51.9
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.2e-49 201.1 180 59.4
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.8e-48 197.2 150 66.0
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 1.0e-40 171.4 223 43.9
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 4.1e-37 159.5 162 53.7
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 1.4e-21 107.8 59 91.5
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 3.1e-21 106.7 68 82.4
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 3.5e-20 103.2 285 34.0
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 4.5e-20 102.8 63 85.7
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 8.3e-14 82.0 121 45.5
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 5.9e-12 75.9 114 42.1
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 9.4e-10 68.6 52 67.3
Oeu037167.1 Olea europaea HOM05D004655 ORTHO05D005567 8.3e-06 55.5 28 85.7


User provided reference genes

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