Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 0.0e+00 1094.7 558 100.0
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.8e-147 526.9 584 53.9
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 4.9e-132 475.7 613 47.5
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.2e-125 454.5 615 45.9
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.7e-122 443.4 540 51.3
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 1.0e-89 335.1 547 41.9
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 2.4e-86 323.9 547 40.0
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 5.8e-85 319.3 483 42.4
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 9.9e-85 318.5 536 41.6
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.7e-84 317.8 535 41.1
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.6e-82 311.2 535 40.0
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 5.3e-78 296.2 481 39.9
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.9e-73 280.0 537 39.1
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.1e-72 278.5 532 36.7
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 2.5e-72 277.3 604 35.9
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 1.3e-71 275.0 533 36.4
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 1.6e-71 274.6 553 36.9
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 3.8e-68 263.5 595 34.8
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 6.5e-68 262.7 593 34.2
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.1e-67 261.9 592 33.6
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.2e-67 260.0 635 33.1
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.6e-66 258.1 539 35.8
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 6.0e-66 256.1 576 35.9
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 7.9e-66 255.8 250 58.8
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 2.5e-64 250.8 552 35.0
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 5.7e-64 249.6 539 34.9
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 2.4e-62 244.2 560 35.4
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 6.9e-62 242.7 435 38.6
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 3.2e-59 233.8 549 33.7
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 2.1e-58 231.1 492 35.0
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 7.9e-58 229.2 544 31.6
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.0e-57 228.8 636 31.6
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 7.4e-56 222.6 605 30.7
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 3.7e-55 220.3 364 38.7
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 8.2e-55 219.2 659 32.0
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.1e-54 218.8 655 30.8
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 2.4e-54 217.6 540 32.8
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 5.3e-54 216.5 539 33.4
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 3.8e-52 210.3 537 31.7
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 6.5e-52 209.5 542 33.0
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.9e-51 208.0 411 36.5
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 4.2e-51 206.8 415 35.9
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 1.0e-49 202.2 539 29.5
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 8.8e-49 199.1 411 36.3
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 1.5e-48 198.4 539 30.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 9.7e-48 195.7 528 30.7
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 1.7e-47 194.9 411 34.3
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 6.3e-47 193.0 442 33.3
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 1.1e-46 192.2 671 28.9
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 3.1e-46 190.7 485 33.0
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 4.1e-46 190.3 607 30.0
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 4.5e-45 186.8 253 41.9
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.7e-44 184.9 593 30.0
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 5.0e-44 183.3 418 34.4
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 3.2e-43 180.6 415 33.0
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 5.5e-43 179.9 483 32.1
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 1.8e-41 174.9 444 32.2
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 3.0e-41 174.1 235 42.1
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 3.0e-41 174.1 421 33.0
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 3.9e-41 173.7 292 40.8
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 3.9e-41 173.7 292 41.1
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 2.0e-40 171.4 509 29.9
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 2.6e-37 161.0 509 28.5
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 7.7e-37 159.5 425 32.7
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 7.7e-37 159.5 727 26.1
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 1.7e-36 158.3 218 39.4
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 8.5e-36 156.0 537 30.2
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 1.5e-35 155.2 545 30.1
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 3.2e-35 154.1 545 30.5
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 7.2e-35 152.9 670 26.3
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.8e-33 148.3 261 37.5
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 5.2e-33 146.7 418 31.8
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 8.8e-33 146.0 675 26.2
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.1e-32 145.6 415 30.8
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.5e-32 145.2 677 26.4
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 5.7e-32 143.3 672 26.5
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 9.7e-32 142.5 431 30.2
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 2.8e-31 141.0 346 32.7
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 6.3e-31 139.8 672 26.3
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 6.3e-31 139.8 659 26.7
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 4.5e-29 133.7 313 35.5
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 1.3e-28 132.1 692 27.5
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 9.4e-27 125.9 578 27.2
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 6.1e-26 123.2 688 24.3
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 6.1e-26 123.2 307 32.2
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.4e-25 122.1 315 31.4
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 1.8e-25 121.7 180 37.8
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 4.0e-25 120.6 552 25.9
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 5.2e-25 120.2 183 40.4
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 8.8e-25 119.4 688 25.3
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 1.2e-24 119.0 339 30.1
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.2e-24 119.0 178 41.0
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 2.0e-24 118.2 520 27.9
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 2.6e-24 117.9 701 24.8
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 9.8e-24 115.9 147 40.8
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 1.3e-23 115.5 235 35.7
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.3e-23 115.5 358 30.2
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 2.8e-23 114.4 539 26.7
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.8e-22 111.7 699 24.2
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 2.4e-22 111.3 179 37.4
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 3.1e-22 110.9 179 36.9
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 7.0e-22 109.8 179 37.4
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 1.2e-21 109.0 109 48.6
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 4.5e-21 107.1 439 27.3
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 5.9e-21 106.7 341 31.4
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 7.7e-21 106.3 746 24.0
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.3e-20 105.5 261 33.0
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 1.7e-20 105.1 729 25.0
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 2.2e-20 104.8 275 31.3
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.2e-20 104.8 527 26.4
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 2.9e-20 104.4 730 22.6
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 1.1e-19 102.4 271 31.0
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.5e-19 102.1 176 35.8
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 3.2e-19 100.9 241 31.5
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.0e-17 95.9 699 23.6
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 2.3e-17 94.7 701 24.4
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 2.0e-16 91.7 332 27.7
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 2.8e-15 87.8 104 46.2
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.1e-14 85.9 393 27.5
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.1e-14 85.9 393 27.5
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 3.8e-12 77.4 103 42.7
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 6.1e-10 70.1 484 26.4
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.0e-09 69.3 366 27.0
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.0e-09 69.3 366 27.0
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 3.7e-07 60.8 94 34.0
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 4.1e-06 57.4 426 24.4
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 7.0e-06 56.6 162 30.9


User provided reference genes

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