Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 4.2e-139 498.0 257 100.0
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 2.9e-95 352.4 259 72.2
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 6.4e-95 351.3 259 72.2
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 5.6e-91 338.2 286 66.1
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 4.0e-89 332.0 259 68.3
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 6.8e-89 331.3 268 67.2
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 8.9e-89 330.9 262 69.5
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 5.8e-88 328.2 259 68.0
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.3e-87 327.0 263 68.8
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 2.9e-87 325.9 257 67.3
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 6.4e-87 324.7 261 67.0
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 1.7e-84 316.6 261 65.5
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 1.7e-84 316.6 257 64.2
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 5.0e-84 315.1 257 63.8
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 4.3e-83 312.0 255 65.9
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 5.6e-83 311.6 258 64.3
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 7.3e-83 311.2 262 64.5
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 9.5e-83 310.8 254 65.4
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.6e-82 310.1 258 64.3
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 3.6e-82 308.9 257 63.0
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 3.6e-82 308.9 259 64.5
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 4.7e-82 308.5 258 64.0
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 6.2e-82 308.1 259 64.1
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 6.2e-82 308.1 257 65.0
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 1.1e-81 307.4 257 63.8
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 1.1e-81 307.4 269 62.5
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 1.8e-81 306.6 258 63.6
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 2.3e-81 306.2 258 62.4
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 3.1e-81 305.8 259 63.7
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 3.1e-81 305.8 260 63.5
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 3.1e-81 305.8 267 62.9
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 4.0e-81 305.4 251 64.5
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 4.0e-81 305.4 256 64.5
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 8.9e-81 304.3 260 63.1
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 2.6e-80 302.8 258 64.3
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 4.4e-80 302.0 281 59.4
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 4.4e-80 302.0 258 62.4
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 5.8e-80 301.6 262 61.8
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 5.8e-80 301.6 261 62.1
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 5.8e-80 301.6 259 62.5
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 5.8e-80 301.6 259 61.8
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 1.3e-79 300.4 253 62.1
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 1.7e-79 300.1 258 61.2
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 2.2e-79 299.7 259 63.3
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 4.9e-79 298.5 259 62.2
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 6.4e-79 298.1 263 62.7
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 9.2e-78 294.3 264 61.4
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 1.0e-76 290.8 268 62.7
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 1.7e-76 290.0 258 59.7
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 2.3e-76 289.7 255 59.2
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 3.0e-76 289.3 205 75.1
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 8.6e-76 287.7 256 59.0
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 1.5e-75 287.0 263 59.7
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 1.9e-75 286.6 255 58.4
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 1.9e-75 286.6 255 60.4
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 2.5e-75 286.2 261 62.1
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 2.5e-75 286.2 257 60.3
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 3.3e-75 285.8 255 59.6
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 4.3e-75 285.4 257 60.3
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 7.3e-75 284.6 256 60.2
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 9.5e-75 284.3 259 61.4
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.4e-73 280.4 255 58.4
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 2.3e-73 279.6 255 58.4
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 4.0e-73 278.9 262 57.6
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 2.0e-72 276.6 255 57.6
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 4.4e-72 275.4 259 57.9
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 7.6e-72 274.6 260 56.9
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 4.9e-71 271.9 256 57.4
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 6.4e-71 271.6 271 55.7
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 5.4e-70 268.5 266 54.9
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 7.1e-70 268.1 254 57.9
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 9.2e-70 267.7 254 53.1
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 1.2e-69 267.3 254 55.9
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 2.1e-69 266.5 280 53.2
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 3.5e-69 265.8 266 54.5
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 3.5e-69 265.8 261 55.6
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 3.5e-69 265.8 259 54.1
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 3.0e-68 262.7 266 53.0
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 3.9e-68 262.3 256 53.9
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 5.1e-68 261.9 280 52.5
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 6.6e-68 261.5 261 56.3
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 8.6e-68 261.2 260 53.8
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 7.3e-67 258.1 250 54.4
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 1.8e-65 253.4 261 57.5
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 8.9e-65 251.1 264 54.9
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 1.2e-64 250.8 254 53.1
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 4.9e-63 245.4 262 53.4
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 6.4e-63 245.0 261 52.1
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 8.4e-63 244.6 255 51.4
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 5.4e-62 241.9 211 64.0
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 4.6e-61 238.8 197 68.0
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 1.3e-60 237.3 265 52.8
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 6.6e-60 235.0 255 49.8
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 2.4e-57 226.5 260 52.7
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 1.5e-56 223.8 303 43.9
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 8.7e-52 208.0 160 64.4
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 6.2e-50 201.8 249 46.6
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 3.9e-44 182.6 160 61.2
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 1.4e-41 174.1 172 55.8
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 6.9e-41 171.8 245 42.9
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 1.0e-28 131.3 228 36.4
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 3.3e-27 126.3 147 50.3
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 4.3e-27 125.9 247 34.8
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 2.3e-20 103.6 130 51.5
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 6.3e-18 95.5 93 51.6
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 1.4e-12 77.8 60 60.0
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 3.3e-11 73.2 224 29.0
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 2.9e-07 60.1 117 33.3
BolC6t39233H Brassica oleracea HOM05D002897 ORTHO05D008718 5.0e-07 59.3 44 59.1


User provided reference genes

Program Settings