Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14088 Avicennia marina HOM05D006118 ORTHO05D007750 2.0e-183 645.6 322 100.0
Migut.E01785 Erythranthe guttata HOM05D006118 ORTHO05D007750 1.5e-162 576.2 322 87.3
PGSC0003DMG402012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 2.1e-159 565.8 322 85.1
Solyc08g061260.4 Solanum lycopersicum HOM05D006118 ORTHO05D007750 1.9e-157 559.3 323 84.5
Sopen08g016640 Solanum pennellii HOM05D006118 ORTHO05D007750 1.9e-157 559.3 323 84.5
SGA_v2.0_scaffold163G37995 Striga asiatica HOM05D006118 ORTHO05D007750 5.6e-157 557.8 337 84.0
Cc08_g01010 Coffea canephora HOM05D006118 ORTHO05D007750 3.1e-155 552.0 327 82.3
HanXRQChr09g0261891 Helianthus annuus HOM05D006118 ORTHO05D007750 2.7e-151 538.9 325 80.3
GSVIVG01035487001 Vitis vinifera HOM05D006118 ORTHO05D007750 2.1e-148 529.3 322 82.3
DCAR_003726 Daucus carota HOM05D006118 ORTHO05D007750 6.2e-148 527.7 332 76.8
Thecc.04G313700 Theobroma cacao HOM05D006118 ORTHO05D007750 2.6e-146 522.3 313 81.2
Hma1.2p1_0641F.1_g194200 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 9.9e-146 520.4 312 80.8
TAR624G0180 Trochodendron aralioides HOM05D006118 ORTHO05D007750 1.3e-145 520.0 323 80.8
Eucgr.C00739 Eucalyptus grandis HOM05D006118 ORTHO05D007750 3.8e-145 518.5 312 82.7
Lsat_1_v5_gn_8_70541 Lactuca sativa HOM05D006118 ORTHO05D007750 4.9e-145 518.1 325 77.8
Gohir.D02G064600 Gossypium hirsutum HOM05D006118 ORTHO05D007750 8.4e-145 517.3 313 80.2
Gorai.005G073100 Gossypium raimondii HOM05D006118 ORTHO05D007750 8.4e-145 517.3 313 80.2
Rhsim13G0216900 Rhododendron simsii HOM05D006118 ORTHO05D007750 1.1e-144 516.9 324 77.5
Gohir.A02G058900 Gossypium hirsutum HOM05D006118 ORTHO05D007750 1.9e-144 516.2 313 80.2
MD08G1073200 Malus domestica HOM05D006118 ORTHO05D007750 3.5e-143 511.9 323 77.1
Prupe.1G402500 Prunus persica HOM05D006118 ORTHO05D007750 4.6e-143 511.5 322 77.0
Ciclev10005468m.g Citrus clementina HOM05D006118 ORTHO05D007750 1.3e-142 510.0 320 79.4
CiPaw.16G067300 Carya illinoinensis HOM05D006118 ORTHO05D007750 1.7e-142 509.6 315 78.4
SalBow1G5335 Salvia bowleyana HOM05D006118 ORTHO05D007750 2.3e-142 509.2 425 65.6
arahy.Tifrunner.gnm1.ann1.ZI0SGT Arachis hypogaea HOM05D006118 ORTHO05D007750 3.0e-142 508.8 321 77.3
RcHm_v2.0_Chr6g0312021 Rosa chinensis HOM05D006118 ORTHO05D007750 3.0e-142 508.8 323 76.2
Cpa.g.sc146.16 Carica papaya HOM05D006118 ORTHO05D007750 3.3e-141 505.4 324 77.2
PSO063G1448 Papaver somniferum HOM05D006118 ORTHO05D007750 1.6e-140 503.1 323 76.5
FvH4_2g30820 Fragaria vesca HOM05D006118 ORTHO05D007750 2.8e-140 502.3 323 75.9
FAN20G1786 Fragaria x ananassa HOM05D006118 ORTHO05D007750 2.8e-140 502.3 323 75.9
CSS0045297 Camellia sinensis var. sinensis HOM05D006118 ORTHO05D007750 4.8e-140 501.5 288 83.3
PSO421G0086 Papaver somniferum HOM05D006118 ORTHO05D007750 6.2e-140 501.1 323 76.8
FAN15G2451 Fragaria x ananassa HOM05D006118 ORTHO05D007750 3.1e-139 498.8 323 75.2
Nitab4.5_0001576g0100 Nicotiana tabacum HOM05D006118 ORTHO05D007750 3.1e-139 498.8 321 77.9
MELO3C016921.2 Cucumis melo HOM05D006118 ORTHO05D007750 4.0e-139 498.4 321 76.3
FAN27G1493 Fragaria x ananassa HOM05D006118 ORTHO05D007750 4.0e-139 498.4 323 75.9
MD15G1048100 Malus domestica HOM05D006118 ORTHO05D007750 4.0e-139 498.4 317 76.0
arahy.Tifrunner.gnm1.ann1.Z643MN Arachis hypogaea HOM05D006118 ORTHO05D007750 5.3e-139 498.0 331 74.6
CsaV3_4G036130 Cucumis sativus L. HOM05D006118 ORTHO05D007750 5.3e-139 498.0 321 76.3
ClCG05G015850 Citrullus lanatus HOM05D006118 ORTHO05D007750 6.9e-139 497.7 321 76.9
Carub.0001s3740 Capsella rubella HOM05D006118 ORTHO05D007750 3.4e-138 495.4 322 76.7
Atru.chr4.3167 Acer truncatum HOM05D006118 ORTHO05D007750 4.5e-138 495.0 323 76.8
AT1G48270 Arabidopsis thaliana HOM05D006118 ORTHO05D007750 5.8e-138 494.6 322 76.4
vmacro04115 Vaccinium macrocarpon HOM05D006118 ORTHO05D007750 9.9e-138 493.8 388 64.9
AL1G54870 Arabidopsis lyrata HOM05D006118 ORTHO05D007750 1.7e-137 493.0 322 76.1
Sabra08G0153100 Salix brachista HOM05D006118 ORTHO05D007750 2.2e-137 492.7 326 75.8
Aqoxy7G01030 Aquilegia oxysepala HOM05D006118 ORTHO05D007750 3.8e-137 491.9 323 75.9
CANSAT25G1353 Cannabis sativa HOM05D006118 ORTHO05D007750 1.1e-136 490.3 326 75.5
CARHR037890 Cardamine hirsuta HOM05D006118 ORTHO05D007750 1.1e-136 490.3 323 75.9
Glyma.17G219300 Glycine max HOM05D006118 ORTHO05D007750 1.1e-136 490.3 321 75.4
Lj5g0024511 Lotus japonicus HOM05D006118 ORTHO05D007750 5.4e-136 488.0 323 74.6
Ca_13095_v3 Cicer arietinum L. HOM05D006118 ORTHO05D007750 7.1e-136 487.6 323 75.2
Duzib151G0955 Durio zibethinus HOM05D006118 ORTHO05D007750 9.3e-136 487.3 293 79.9
Phvul.001G044800 Phaseolus vulgaris HOM05D006118 ORTHO05D007750 1.6e-135 486.5 319 75.2
BolC6t35406H Brassica oleracea HOM05D006118 ORTHO05D007750 6.0e-135 484.6 323 74.9
Thhalv10011644m.g Eutrema salsugineum HOM05D006118 ORTHO05D007750 6.0e-135 484.6 324 74.4
Sed0026686 Sechium edule HOM05D006118 ORTHO05D007750 1.8e-134 483.0 303 75.9
Sp1g35230 Schrenkiella parvula HOM05D006118 ORTHO05D007750 3.0e-134 482.3 324 74.1
BcaB07g33772 Brassica carinata HOM05D006118 ORTHO05D007750 1.5e-133 479.9 324 74.1
Oeu036787.2 Olea europaea HOM05D006118 ORTHO05D007750 1.5e-133 479.9 273 85.0
BcaC08g43024 Brassica carinata HOM05D006118 ORTHO05D007750 5.6e-133 478.0 324 73.8
A06p04570 Brassica napus HOM05D006118 ORTHO05D007750 5.6e-133 478.0 325 73.8
C06p02770 Brassica napus HOM05D006118 ORTHO05D007750 5.6e-133 478.0 324 73.8
BraA06t23661Z Brassica rapa HOM05D006118 ORTHO05D007750 5.6e-133 478.0 325 73.8
PGR142G4277 Punica granatum HOM05D006118 ORTHO05D007750 1.3e-132 476.9 320 74.7
Lalb_Chr24g0393681 Lupinus albus HOM05D006118 ORTHO05D007750 1.4e-131 473.4 320 73.4
Manes.03G212200 Manihot esculenta HOM05D006118 ORTHO05D007750 1.2e-130 470.3 323 74.3
VMungo0647G1968 Vigna mungo HOM05D006118 ORTHO05D007750 1.9e-128 463.0 279 79.6
Actinidia01325 Actinidia chinensis HOM05D006118 ORTHO05D007750 2.5e-128 462.6 271 82.3
Dinv41849 Davidia involucrata HOM05D006118 ORTHO05D007750 3.2e-128 462.2 260 83.1
Sc06g0000090 Simmondsia chinensis HOM05D006118 ORTHO05D007750 3.2e-128 462.2 321 72.3
Glyma.14G107200 Glycine max HOM05D006118 ORTHO05D007750 5.5e-128 461.5 287 77.7
ECA236G0212 Erigeron canadensis HOM05D006118 ORTHO05D007750 1.8e-126 456.4 263 81.7
Peaxi162Scf00486g00116 Petunia axillaris HOM05D006118 ORTHO05D007750 1.9e-125 453.0 322 72.0
THA.LOC104824720 Tarenaya hassleriana HOM05D006118 ORTHO05D007750 4.3e-125 451.8 319 73.4
Hma1.2p1_0641F.1_g194210 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 3.4e-122 442.2 252 82.1
Medtr1g015010 Medicago truncatula HOM05D006118 ORTHO05D007750 4.2e-120 435.3 323 69.3
Os06g0199800 Oryza sativa ssp. japonica HOM05D006118 ORTHO05D007750 3.5e-119 432.2 308 67.5
Oeu024208.1 Olea europaea HOM05D006118 ORTHO05D007750 6.1e-119 431.4 240 86.7
TWI53G1421 Tripterygium wilfordii HOM05D006118 ORTHO05D007750 1.3e-118 430.3 320 70.9
CDE06G0461 Ceratophyllum demersum HOM05D006118 ORTHO05D007750 7.4e-117 424.5 293 72.0
Psat6g023080 Pisum sativum HOM05D006118 ORTHO05D007750 5.3e-115 418.3 287 74.2
Aa31LG10G5490 Aethionema arabicum HOM05D006118 ORTHO05D007750 2.6e-114 416.0 322 68.0
Potri.008G206000 Populus trichocarpa HOM05D006118 ORTHO05D007750 1.3e-113 413.7 287 72.5
FAN24G3410 Fragaria x ananassa HOM05D006118 ORTHO05D007750 4.2e-112 408.7 257 75.9
COL.COLO4_34509 Corchorus olitorius HOM05D006118 ORTHO05D007750 2.7e-111 406.0 347 63.4
AUR62020280 Chenopodium quinoa HOM05D006118 ORTHO05D007750 2.0e-109 399.8 301 70.1
AagrBONN_evm.TU.Sc2ySwM_228.1339 Anthoceros agrestis HOM05D006118 ORTHO05D007750 3.3e-109 399.1 311 65.0
Ah.12g061330 Amaranthus hybridus HOM05D006118 ORTHO05D007750 4.3e-109 398.7 316 66.5
TPR.G38901 Trifolium pratense HOM05D006118 ORTHO05D007750 9.1e-107 391.0 264 72.7
EL10Ac2g02406 Beta vulgaris HOM05D006118 ORTHO05D007750 2.9e-105 386.0 318 65.4
Mapoly0073s0070 Marchantia polymorpha HOM05D006118 ORTHO05D007750 2.3e-102 376.3 308 61.7
Pp3c15_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 1.7e-97 360.1 314 57.6
Pp3c9_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 9.4e-96 354.4 292 59.9
SMO119G0499 Selaginella moellendorffii HOM05D006118 ORTHO05D007750 1.1e-93 347.4 267 62.5
Hund25545 Selenicereus undatus HOM05D006118 ORTHO05D007750 6.3e-92 341.7 292 64.0
Haze_18321 Corylus avellana HOM05D006118 ORTHO05D007750 1.5e-88 330.5 644 36.0
AUR62037725 Chenopodium quinoa HOM05D006118 ORTHO05D007750 5.5e-88 328.6 317 58.7
ATR0598G044 Amborella trichopoda HOM05D006118 ORTHO05D007750 4.7e-87 325.5 209 75.6
Lj7A209G43 Lonicera japonica HOM05D006118 ORTHO05D007750 8.3e-84 314.7 240 67.1
HPP92_016236 Vanilla planifolia HOM05D006118 ORTHO05D007750 7.7e-82 308.1 312 54.2
PGSC0003DMG401012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 3.7e-76 289.3 163 84.0
arahy.Tifrunner.gnm1.ann1.C1NZN8 Arachis hypogaea HOM05D006118 ORTHO05D007750 5.9e-74 282.0 331 50.5
Nitab4.5_0009849g0030 Nicotiana tabacum HOM05D006118 ORTHO05D007750 7.7e-74 281.6 324 52.5
Zm00001eb278600 Zea mays HOM05D006118 ORTHO05D007750 8.0e-71 271.6 191 63.4
CBR_g36835 Chara braunii HOM05D006118 ORTHO05D007750 6.8e-70 268.5 220 60.0
BcaB01g03835 Brassica carinata HOM05D006118 ORTHO05D007750 1.5e-69 267.3 192 69.8
unitig_8.g4842 Utricularia gibba HOM05D006118 ORTHO05D007750 3.3e-64 249.6 156 76.3
BcaB08g36375 Brassica carinata HOM05D006118 ORTHO05D007750 5.8e-61 238.8 192 65.6
arahy.Tifrunner.gnm1.ann1.K6H74S Arachis hypogaea HOM05D006118 ORTHO05D007750 1.9e-59 233.8 159 72.3
MD15G1048300 Malus domestica HOM05D006118 ORTHO05D007750 4.3e-56 222.6 248 52.0
BcaB07g32513 Brassica carinata HOM05D006118 ORTHO05D007750 5.4e-51 205.7 178 56.7
BcaB01g01553 Brassica carinata HOM05D006118 ORTHO05D007750 3.5e-50 203.0 148 65.5
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 1.7e-44 184.1 129 72.1
Lalb_Chr23g0268011 Lupinus albus HOM05D006118 ORTHO05D007750 1.9e-40 170.6 101 76.2
Lj7A209G42 Lonicera japonica HOM05D006118 ORTHO05D007750 8.9e-38 161.8 90 84.4
PRCOL_00004868 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 3.6e-31 139.8 275 35.6
ATR0684G160 Amborella trichopoda HOM05D006118 ORTHO05D007750 6.9e-30 135.6 95 67.4
PRCOL_00005697 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 1.4e-27 127.9 325 29.5
SEGI_23264 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 4.2e-27 126.3 80 75.0
MCO03G156 Micromonas commoda HOM05D006118 ORTHO05D007750 1.8e-17 94.4 359 25.9
Lalb_Chr23g0268021 Lupinus albus HOM05D006118 ORTHO05D007750 8.4e-12 75.5 46 76.1
BcaB01g01552 Brassica carinata HOM05D006118 ORTHO05D007750 2.3e-09 67.4 52 71.2
SEGI_18851 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 8.7e-09 65.5 59 59.3
MD15G1048200 Malus domestica HOM05D006118 ORTHO05D007750 1.9e-08 64.3 48 68.8


User provided reference genes

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