Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1407 Avicennia marina HOM05D007279 ORTHO05D009212 7.3e-144 513.8 255 100.0
Migut.C01071 Erythranthe guttata HOM05D007279 ORTHO05D009212 5.3e-86 321.6 214 74.8
CAN.G405.7 Capsicum annuum HOM05D007279 ORTHO05D009212 2.7e-85 319.3 214 75.7
Dinv27265 Davidia involucrata HOM05D007279 ORTHO05D009212 4.2e-83 312.0 214 75.7
Nitab4.5_0000317g0110 Nicotiana tabacum HOM05D007279 ORTHO05D009212 7.2e-83 311.2 214 75.2
Solyc04g057980.3 Solanum lycopersicum HOM05D007279 ORTHO05D009212 7.2e-83 311.2 214 75.2
Sopen04g025840 Solanum pennellii HOM05D007279 ORTHO05D009212 1.2e-82 310.5 214 74.8
Nitab4.5_0003485g0020 Nicotiana tabacum HOM05D007279 ORTHO05D009212 3.6e-82 308.9 214 75.2
PGSC0003DMG400025319 Solanum tuberosum HOM05D007279 ORTHO05D009212 1.0e-81 307.4 214 74.8
CSS0035764 Camellia sinensis var. sinensis HOM05D007279 ORTHO05D009212 4.0e-81 305.4 216 73.1
Potri.005G183000 Populus trichocarpa HOM05D007279 ORTHO05D009212 2.6e-80 302.8 210 75.7
COL.COLO4_33390 Corchorus olitorius HOM05D007279 ORTHO05D009212 4.4e-80 302.0 211 74.9
Duzib093G1369 Durio zibethinus HOM05D007279 ORTHO05D009212 9.8e-80 300.8 212 74.5
Manes.02G169000 Manihot esculenta HOM05D007279 ORTHO05D009212 1.3e-79 300.4 210 71.4
Peaxi162Scf00066g00422 Petunia axillaris HOM05D007279 ORTHO05D009212 2.8e-79 299.3 215 72.6
GSVIVG01008801001 Vitis vinifera HOM05D007279 ORTHO05D009212 7.0e-78 294.7 203 75.4
Gohir.D03G063100 Gossypium hirsutum HOM05D007279 ORTHO05D009212 1.6e-77 293.5 211 73.0
Gorai.013G108300 Gossypium raimondii HOM05D007279 ORTHO05D009212 1.6e-77 293.5 211 73.0
Gohir.A02G110900 Gossypium hirsutum HOM05D007279 ORTHO05D009212 1.0e-76 290.8 211 72.0
Sabra05G0138700 Salix brachista HOM05D007279 ORTHO05D009212 1.0e-76 290.8 215 72.6
Cfa018422 Carpinus fangiana HOM05D007279 ORTHO05D009212 2.9e-76 289.3 219 69.9
Cc10_g13680 Coffea canephora HOM05D007279 ORTHO05D009212 5.0e-76 288.5 210 71.4
Ca_16613_v3 Cicer arietinum L. HOM05D007279 ORTHO05D009212 1.1e-75 287.3 214 70.1
TWI34G0215 Tripterygium wilfordii HOM05D007279 ORTHO05D009212 5.5e-75 285.0 210 70.0
Lsat_1_v5_gn_1_7161 Lactuca sativa HOM05D007279 ORTHO05D009212 3.6e-74 282.3 218 69.7
Medtr3g088645 Medicago truncatula HOM05D007279 ORTHO05D009212 6.1e-74 281.6 210 71.9
QL09p032239 Quercus lobata HOM05D007279 ORTHO05D009212 6.1e-74 281.6 212 69.8
CiPaw.16G022500 Carya illinoinensis HOM05D007279 ORTHO05D009212 8.9e-73 277.7 210 70.0
Glyma.04G245200 Glycine max HOM05D007279 ORTHO05D009212 1.5e-72 276.9 213 70.0
Prupe.1G488900 Prunus persica HOM05D007279 ORTHO05D009212 2.6e-72 276.2 213 71.4
PGR044G1698 Punica granatum HOM05D007279 ORTHO05D009212 2.6e-72 276.2 216 69.0
Glyma.06G118000 Glycine max HOM05D007279 ORTHO05D009212 3.4e-72 275.8 214 69.6
Lj4A679T22 Lonicera japonica HOM05D007279 ORTHO05D009212 3.4e-72 275.8 209 68.9
arahy.Tifrunner.gnm1.ann1.03R76N Arachis hypogaea HOM05D007279 ORTHO05D009212 5.7e-72 275.0 216 67.1
arahy.Tifrunner.gnm1.ann1.G5JU44 Arachis hypogaea HOM05D007279 ORTHO05D009212 5.7e-72 275.0 216 67.1
Lj4A677T28 Lonicera japonica HOM05D007279 ORTHO05D009212 5.7e-72 275.0 206 69.9
unitig_46.g18082 Utricularia gibba HOM05D007279 ORTHO05D009212 9.8e-72 274.2 207 67.1
Lalb_Chr08g0241031 Lupinus albus HOM05D007279 ORTHO05D009212 2.8e-71 272.7 215 67.4
RcHm_v2.0_Chr6g0296781 Rosa chinensis HOM05D007279 ORTHO05D009212 2.8e-71 272.7 213 69.0
FvH4_2g27960 Fragaria vesca HOM05D007279 ORTHO05D009212 1.1e-70 270.8 212 69.8
Hma1.2p1_0880F.1_g231840 Hydrangea macrophylla HOM05D007279 ORTHO05D009212 1.4e-70 270.4 219 68.0
FAN27G1298 Fragaria x ananassa HOM05D007279 ORTHO05D009212 1.8e-70 270.0 207 70.0
MD15G1133300 Malus domestica HOM05D007279 ORTHO05D009212 1.8e-70 270.0 214 67.8
DCAR_016660 Daucus carota HOM05D007279 ORTHO05D009212 3.2e-70 269.2 203 69.5
HanXRQChr02g0045151 Helianthus annuus HOM05D007279 ORTHO05D009212 3.2e-70 269.2 219 66.2
Phvul.009G130400 Phaseolus vulgaris HOM05D007279 ORTHO05D009212 4.1e-70 268.9 209 66.0
CsaV3_7G022180 Cucumis sativus L. HOM05D007279 ORTHO05D009212 5.4e-70 268.5 213 65.3
FAN24G0438 Fragaria x ananassa HOM05D007279 ORTHO05D009212 5.4e-70 268.5 212 69.3
Sabra02G0061000 Salix brachista HOM05D007279 ORTHO05D009212 5.4e-70 268.5 188 73.4
EL10Ac1g01365 Beta vulgaris HOM05D007279 ORTHO05D009212 9.2e-70 267.7 209 67.5
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.2e-69 267.3 199 67.8
MELO3C012712.2 Cucumis melo HOM05D007279 ORTHO05D009212 1.2e-69 267.3 212 66.0
Psat5g084400 Pisum sativum HOM05D007279 ORTHO05D009212 1.2e-69 267.3 215 66.5
VMungo1309G2060 Vigna mungo HOM05D007279 ORTHO05D009212 1.2e-69 267.3 206 67.5
CANSAT25G0430 Cannabis sativa HOM05D007279 ORTHO05D009212 3.5e-69 265.8 218 66.5
THA.LOC104808254 Tarenaya hassleriana HOM05D007279 ORTHO05D009212 3.5e-69 265.8 204 68.6
AUR62007704 Chenopodium quinoa HOM05D007279 ORTHO05D009212 4.5e-69 265.4 212 67.0
ClCG09G021820 Citrullus lanatus HOM05D007279 ORTHO05D009212 4.5e-69 265.4 208 66.3
FAN20G2640 Fragaria x ananassa HOM05D007279 ORTHO05D009212 5.9e-69 265.0 212 69.3
Lj1g0002247 Lotus japonicus HOM05D007279 ORTHO05D009212 5.9e-69 265.0 216 64.8
TAR628G0029 Trochodendron aralioides HOM05D007279 ORTHO05D009212 5.9e-69 265.0 210 67.1
Atru.chr13.1590 Acer truncatum HOM05D007279 ORTHO05D009212 1.0e-68 264.2 213 68.1
Eucgr.F03852 Eucalyptus grandis HOM05D007279 ORTHO05D009212 1.3e-68 263.8 210 65.7
Ciclev10002484m.g Citrus clementina HOM05D007279 ORTHO05D009212 1.1e-67 260.8 205 65.4
AUR62013436 Chenopodium quinoa HOM05D007279 ORTHO05D009212 1.9e-67 260.0 212 64.6
Sed0026443 Sechium edule HOM05D007279 ORTHO05D009212 3.3e-67 259.2 207 65.7
ECA247G0566 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.6e-66 256.9 138 87.0
Aqoxy6G00304 Aquilegia oxysepala HOM05D007279 ORTHO05D009212 2.8e-66 256.1 202 65.3
Nn5g28445 Nelumbo nucifera HOM05D007279 ORTHO05D009212 6.1e-66 255.0 201 68.7
Ah.05g169060 Amaranthus hybridus HOM05D007279 ORTHO05D009212 1.8e-65 253.4 203 64.5
Rhsim02G0114000 Rhododendron simsii HOM05D007279 ORTHO05D009212 4.0e-65 252.3 215 64.2
vmacro17341 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 5.2e-65 251.9 229 62.9
PSO528G0084 Papaver somniferum HOM05D007279 ORTHO05D009212 1.2e-64 250.8 204 65.2
Rhsim02G0113900 Rhododendron simsii HOM05D007279 ORTHO05D009212 4.4e-64 248.8 208 64.9
Aa31LG6G14860 Aethionema arabicum HOM05D007279 ORTHO05D009212 9.8e-64 247.7 145 80.7
PSO170G3576 Papaver somniferum HOM05D007279 ORTHO05D009212 1.3e-63 247.3 204 64.7
A08p22940 Brassica napus HOM05D007279 ORTHO05D009212 2.9e-63 246.1 219 59.8
Thhalv10026209m.g Eutrema salsugineum HOM05D007279 ORTHO05D009212 2.9e-63 246.1 203 62.6
BcaC01g00366 Brassica carinata HOM05D007279 ORTHO05D009212 3.7e-63 245.7 208 63.0
BolC3t20136H Brassica oleracea HOM05D007279 ORTHO05D009212 3.7e-63 245.7 213 61.5
Sp7g35570 Schrenkiella parvula HOM05D007279 ORTHO05D009212 4.9e-63 245.4 173 70.5
C03p78920 Brassica napus HOM05D007279 ORTHO05D009212 6.4e-63 245.0 208 63.0
BraA08t34256Z Brassica rapa HOM05D007279 ORTHO05D009212 1.1e-62 244.2 219 59.4
Rhsim02G0113400 Rhododendron simsii HOM05D007279 ORTHO05D009212 2.4e-62 243.0 233 60.1
CARHR246340 Cardamine hirsuta HOM05D007279 ORTHO05D009212 7.0e-62 241.5 204 61.8
AL7G12720 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 3.5e-61 239.2 202 61.9
BcaB03g12324 Brassica carinata HOM05D007279 ORTHO05D009212 4.6e-61 238.8 219 58.4
AT4G37925 Arabidopsis thaliana HOM05D007279 ORTHO05D009212 6.0e-61 238.4 204 62.3
Os04g0539000 Oryza sativa ssp. japonica HOM05D007279 ORTHO05D009212 8.6e-60 234.6 145 75.9
Carub.0007s0229 Capsella rubella HOM05D007279 ORTHO05D009212 3.3e-59 232.6 203 62.6
Potri.002G077600 Populus trichocarpa HOM05D007279 ORTHO05D009212 3.6e-58 229.2 177 68.4
MBI03_g13490_MAGBIO Magnolia biondii HOM05D007279 ORTHO05D009212 6.2e-58 228.4 202 62.9
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 5.2e-57 225.3 212 61.8
ATR0681G064 Amborella trichopoda HOM05D007279 ORTHO05D009212 2.6e-56 223.0 125 82.4
Zm00001eb075370 Zea mays HOM05D007279 ORTHO05D009212 5.8e-56 221.9 205 57.1
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 3.9e-52 209.1 193 59.6
SEGI_28724 Sequoiadendron giganteum HOM05D007279 ORTHO05D009212 8.6e-52 208.0 135 71.9
Thecc.08G133700 Theobroma cacao HOM05D007279 ORTHO05D009212 7.6e-48 194.9 153 68.0
Pp3c1_14910 Physcomitrium patens HOM05D007279 ORTHO05D009212 1.7e-44 183.7 122 68.0
CBR_g26037 Chara braunii HOM05D007279 ORTHO05D009212 3.9e-44 182.6 133 65.4
SMO339G0044 Selaginella moellendorffii HOM05D007279 ORTHO05D009212 8.6e-44 181.4 133 66.2
AL3G19570 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 1.5e-40 170.6 136 66.2
AagrBONN_evm.TU.Sc2ySwM_344.1177 Anthoceros agrestis HOM05D007279 ORTHO05D009212 7.6e-40 168.3 147 55.1
Mapoly0063s0013 Marchantia polymorpha HOM05D007279 ORTHO05D009212 1.6e-37 160.6 112 67.0
TPR.G6347 Trifolium pratense HOM05D007279 ORTHO05D009212 1.1e-35 154.5 85 84.7
SalBow7G1271 Salvia bowleyana HOM05D007279 ORTHO05D009212 9.6e-35 151.4 210 48.1
vmacro17338 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 1.6e-34 150.6 180 52.8
TAR623G1519 Trochodendron aralioides HOM05D007279 ORTHO05D009212 2.8e-34 149.8 178 50.0
vmacro17312 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 4.8e-26 122.5 110 61.8
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 2.1e-21 107.1 136 48.5
Zm00001eb427570 Zea mays HOM05D007279 ORTHO05D009212 4.6e-21 105.9 66 74.2
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 1.7e-07 60.8 138 36.2


User provided reference genes

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