Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 0.0e+00 1963.0 990 100.0
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 0.0e+00 1191.8 1001 63.4
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.1e-251 874.0 1019 53.5
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.6e-242 843.6 1095 48.3
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 3.8e-180 636.3 996 44.6
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 1.4e-169 601.3 1014 41.6
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 2.1e-162 577.4 1011 41.0
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.5e-144 518.1 1002 39.1
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 1.5e-144 518.1 1084 36.8
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 4.9e-143 513.1 1077 36.2
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 3.1e-105 387.5 967 33.9
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 9.9e-96 355.9 999 33.0
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 8.8e-68 263.1 706 33.6
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 6.3e-66 256.9 1201 27.4
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.7e-63 248.8 1205 26.6
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.7e-61 240.7 1207 26.1
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 8.2e-58 229.9 1196 25.0
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.9e-55 221.5 1313 25.0
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 1.6e-53 215.7 393 38.7
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 3.0e-52 211.5 1198 24.7
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 1.7e-50 205.7 1202 24.9
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 6.3e-50 203.8 1202 24.6
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 2.2e-47 195.3 1269 25.3
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 1.1e-46 193.0 1322 23.6
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 8.0e-45 186.8 1218 25.5
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.8e-44 185.7 1279 24.0
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.0e-43 182.2 1199 24.7
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.7e-40 171.8 1183 24.8
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.1e-37 162.2 1229 23.6
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.9e-30 139.0 1141 23.8
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 3.0e-28 131.7 1302 22.4
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 4.4e-27 127.9 1242 22.2
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 1.3e-26 126.3 907 26.4
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 2.3e-23 115.5 1071 22.6
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 8.6e-23 113.6 1242 22.1
unitig_85.g27152 Utricularia gibba HOM05D004021 ORTHO05D003767 1.9e-22 112.5 184 40.8
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.1e-21 109.0 1152 21.5
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 8.0e-21 107.1 1153 22.5
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 6.8e-20 104.0 1071 22.2
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 1.2e-19 103.2 142 38.0
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.5e-19 102.8 92 47.8
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 2.0e-19 102.4 1225 21.6
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 3.4e-19 101.7 1267 21.6
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 4.4e-19 101.3 153 35.3
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 4.4e-19 101.3 112 47.3
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 9.8e-19 100.1 122 38.5
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.9e-17 95.9 138 39.1
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 2.4e-17 95.5 295 31.9
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 2.4e-17 95.5 366 28.1
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 5.4e-17 94.4 1219 21.8
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 5.4e-17 94.4 110 45.5
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 7.0e-17 94.0 108 43.5
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.2e-17 93.6 1186 21.6
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.2e-16 93.2 111 41.4
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 2.0e-16 92.4 131 38.2
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 2.0e-16 92.4 1253 21.6
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 3.5e-16 91.7 205 32.7
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 7.8e-16 90.5 236 28.0
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.0e-15 90.1 106 39.6
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.0e-15 90.1 242 28.9
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.7e-15 89.4 110 38.2
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 2.3e-15 89.0 91 46.2
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 2.3e-15 89.0 1220 21.4
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.9e-15 88.2 118 40.7
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 3.9e-15 88.2 105 42.9
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 5.0e-15 87.8 174 34.5
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 6.6e-15 87.4 187 33.2
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 8.6e-15 87.0 133 36.8
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 1.1e-14 86.7 113 39.8
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.1e-14 86.7 174 34.5
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.5e-14 86.3 86 46.5
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 4.3e-14 84.7 94 44.7
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 5.6e-14 84.3 92 43.5
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.3e-14 84.0 239 27.2
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.5e-14 83.6 286 27.3
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.5e-14 83.6 450 24.4
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 2.1e-13 82.4 90 43.3
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.1e-13 82.4 127 32.3
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 2.1e-13 82.4 85 40.0
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 2.8e-13 82.0 365 25.5
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.8e-13 82.0 126 30.2
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 3.6e-13 81.6 1157 21.8
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 4.7e-13 81.3 489 25.6
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 8.1e-13 80.5 1231 23.1
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.1e-12 80.1 113 36.3
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.1e-12 80.1 104 35.6
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 1.1e-12 80.1 286 29.0
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.4e-12 79.7 88 42.0
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.4e-12 79.7 416 25.0
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 1.8e-12 79.3 1051 21.8
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 1.8e-12 79.3 213 29.6
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 3.1e-12 78.6 240 31.7
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 5.2e-12 77.8 345 26.7
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 5.2e-12 77.8 419 24.3
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 5.2e-12 77.8 85 43.5
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 5.2e-12 77.8 59 50.8
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 8.9e-12 77.0 154 32.5
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.2e-11 76.6 80 45.0
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.5e-11 76.3 1071 22.4
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 2.0e-11 75.9 80 43.8
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 2.0e-11 75.9 80 43.8
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 2.0e-11 75.9 1086 22.2
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.0e-11 75.9 407 25.6
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 2.6e-11 75.5 313 25.9
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 2.6e-11 75.5 1004 22.1
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.6e-11 75.5 431 25.3
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 2.6e-11 75.5 438 24.7
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 3.4e-11 75.1 1067 23.0
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 3.4e-11 75.1 100 39.0
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 4.4e-11 74.7 81 42.0
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 4.4e-11 74.7 287 24.4
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 4.4e-11 74.7 88 43.2
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 9.9e-11 73.6 305 24.9
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 9.9e-11 73.6 283 26.9
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 1.3e-10 73.2 64 45.3
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.3e-10 73.2 516 24.2
Nitab4.5_0000406g0040 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.2e-10 72.4 1077 21.8
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.2e-10 72.4 125 34.4
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 2.9e-10 72.0 269 27.5
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 2.9e-10 72.0 980 22.7
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 8.3e-10 70.5 1083 21.6
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 8.3e-10 70.5 272 27.9
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-09 70.1 1084 21.6
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 1.1e-09 70.1 1084 21.6
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 1.1e-09 70.1 299 25.4
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 1.1e-09 70.1 149 31.5
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 1.1e-09 70.1 149 29.5
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.9e-09 69.3 85 38.8
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 2.1e-08 65.9 59 47.5
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 2.7e-08 65.5 133 28.6
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 3.5e-08 65.1 425 24.2
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 6.0e-08 64.3 252 25.4
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 7.8e-08 63.9 88 36.4
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.0e-07 63.5 282 26.6
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.0e-07 63.5 278 25.5
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 1.0e-07 63.5 1082 21.3
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 1.3e-07 63.2 118 33.1
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 1.3e-07 63.2 83 42.2
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 1.3e-07 63.2 106 34.9
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.7e-07 62.8 62 41.9
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.7e-07 62.8 289 25.6
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 2.3e-07 62.4 116 32.8
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.3e-07 62.4 55 50.9
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 3.0e-07 62.0 289 25.3
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.0e-07 62.0 55 50.9
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 3.9e-07 61.6 192 26.0
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.9e-07 61.6 279 25.8
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 5.1e-07 61.2 973 20.7
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 6.6e-07 60.8 940 22.6
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 1.9e-06 59.3 105 33.3
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 1.9e-06 59.3 105 33.3
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 1.9e-06 59.3 158 28.5
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.9e-06 59.3 206 30.1
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 2.5e-06 58.9 356 24.4
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 3.3e-06 58.5 91 37.4
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 4.3e-06 58.2 276 25.4
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.3e-06 58.2 143 32.2
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 4.3e-06 58.2 162 27.8
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 5.6e-06 57.8 186 29.0
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 5.6e-06 57.8 1218 20.4


User provided reference genes

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