Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 8.4e-136 487.3 290 100.0
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 9.8e-52 208.0 292 49.3
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 1.4e-45 187.6 288 49.0
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 1.9e-34 150.6 318 39.6
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 2.3e-29 133.7 299 35.8
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 4.0e-29 132.9 316 36.7
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.2e-28 131.3 309 39.5
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 2.0e-28 130.6 289 37.0
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 4.4e-28 129.4 305 36.7
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 7.6e-28 128.6 297 38.0
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 3.8e-27 126.3 316 37.3
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 3.8e-27 126.3 307 37.1
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 8.4e-27 125.2 280 38.2
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 1.1e-26 124.8 235 40.0
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 4.1e-26 122.9 311 36.0
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.6e-25 120.9 298 35.6
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 2.7e-25 120.2 298 37.2
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 4.6e-25 119.4 288 36.5
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 1.3e-24 117.9 260 36.5
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 2.3e-24 117.1 293 39.6
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 6.6e-24 115.5 314 34.1
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 9.6e-23 111.7 286 34.3
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 2.1e-22 110.5 296 34.8
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 3.6e-22 109.8 290 33.4
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 4.7e-22 109.4 301 34.6
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 4.7e-22 109.4 306 34.0
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 8.1e-22 108.6 301 34.9
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.1e-21 108.2 303 34.0
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 2.4e-21 107.1 295 33.6
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 3.1e-21 106.7 294 33.3
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 4.0e-21 106.3 295 32.9
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 6.9e-21 105.5 302 33.8
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 8.9e-21 105.1 301 35.2
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.6e-20 103.6 294 32.3
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 3.4e-20 103.2 288 33.7
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 4.4e-20 102.8 285 31.6
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 5.8e-20 102.4 294 33.0
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 7.6e-20 102.1 299 31.4
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 9.9e-20 101.7 288 33.3
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 1.3e-19 101.3 300 33.3
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 2.2e-19 100.5 302 32.5
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.9e-19 100.1 296 33.4
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 8.4e-19 98.6 282 35.5
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-18 98.2 280 32.1
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 1.1e-18 98.2 280 32.1
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.1e-18 98.2 288 32.6
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.1e-18 98.2 274 35.0
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 2.4e-18 97.1 323 33.4
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 3.2e-18 96.7 286 31.1
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 3.2e-18 96.7 289 32.2
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 3.2e-18 96.7 295 32.9
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 4.2e-18 96.3 279 31.2
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 4.2e-18 96.3 291 31.6
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 4.2e-18 96.3 287 32.1
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 5.4e-18 95.9 296 32.1
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 5.4e-18 95.9 300 34.0
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 7.1e-18 95.5 303 31.0
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 7.1e-18 95.5 284 30.3
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 7.1e-18 95.5 301 33.6
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 9.3e-18 95.1 280 32.1
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 9.3e-18 95.1 292 31.8
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 1.6e-17 94.4 351 37.0
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 1.6e-17 94.4 281 32.4
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 2.1e-17 94.0 287 34.5
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 2.7e-17 93.6 284 32.0
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 2.7e-17 93.6 300 30.0
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 3.5e-17 93.2 290 33.1
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 3.5e-17 93.2 284 34.2
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 6.0e-17 92.4 157 42.0
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 6.0e-17 92.4 351 37.0
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 7.8e-17 92.0 298 31.2
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 1.3e-16 91.3 292 30.5
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.3e-16 91.3 325 36.3
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.3e-16 91.3 290 31.4
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.3e-16 91.3 285 33.0
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 1.3e-16 91.3 281 32.7
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 1.7e-16 90.9 296 35.5
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 3.0e-16 90.1 296 32.1
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 3.9e-16 89.7 289 32.2
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 5.1e-16 89.4 303 29.7
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 5.1e-16 89.4 287 32.4
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 8.7e-16 88.6 292 30.1
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 8.7e-16 88.6 287 32.1
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 1.1e-15 88.2 283 31.8
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 1.1e-15 88.2 291 34.0
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 1.1e-15 88.2 294 31.6
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 2.5e-15 87.0 289 29.4
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 2.5e-15 87.0 304 31.2
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 5.6e-15 85.9 136 40.4
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 7.3e-15 85.5 296 31.1
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 7.3e-15 85.5 287 33.8
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 9.6e-15 85.1 290 35.5
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.3e-14 84.7 305 32.1
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 2.1e-14 84.0 277 31.0
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.1e-14 84.0 283 31.1
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.8e-14 83.6 280 30.7
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 2.8e-14 83.6 304 31.9
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 3.6e-14 83.2 285 36.8
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 1.1e-13 81.6 275 29.8
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 1.4e-13 81.3 290 31.7
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 5.3e-13 79.3 284 31.0
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 5.3e-13 79.3 284 31.0
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.2e-12 78.2 308 29.9
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.5e-12 77.8 283 30.7
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.0e-12 77.4 300 29.0
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 2.0e-12 77.4 286 31.1
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 2.0e-12 77.4 287 30.7
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 4.5e-12 76.3 299 31.4
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 5.8e-12 75.9 293 33.4
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 7.6e-12 75.5 284 31.0
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 9.9e-12 75.1 136 39.0
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 9.9e-12 75.1 295 30.5
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.3e-11 74.7 279 30.5
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.7e-11 74.3 297 29.0
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.7e-11 74.3 301 30.2
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 2.2e-11 73.9 172 32.6
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 2.2e-11 73.9 129 35.7
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 4.9e-11 72.8 299 28.1
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 4.9e-11 72.8 282 31.2
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 6.4e-11 72.4 136 36.0
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-10 71.6 282 31.2
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 1.1e-10 71.6 282 31.2
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 1.1e-10 71.6 129 41.1
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.4e-10 71.2 282 31.2
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.4e-10 71.2 298 28.9
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 1.4e-10 71.2 295 31.9
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 1.9e-10 70.9 282 29.4
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 1.9e-10 70.9 292 31.2
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 1.9e-10 70.9 311 28.6
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 3.2e-10 70.1 167 34.1
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 3.2e-10 70.1 162 37.0
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 3.2e-10 70.1 297 27.6
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 3.2e-10 70.1 277 30.0
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 3.2e-10 70.1 280 29.6
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 3.2e-10 70.1 293 30.7
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 7.1e-10 68.9 278 29.1
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 7.1e-10 68.9 128 42.2
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 7.1e-10 68.9 292 28.4
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 9.3e-10 68.6 165 35.2
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 1.6e-09 67.8 285 30.5
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 1.6e-09 67.8 159 33.3
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 3.5e-09 66.6 288 29.9
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 3.5e-09 66.6 317 30.9
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 3.5e-09 66.6 285 29.1
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 4.6e-09 66.2 304 30.9
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 6.0e-09 65.9 285 30.2
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 7.9e-09 65.5 129 39.5
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 7.9e-09 65.5 284 28.5
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.8e-08 64.3 309 27.2
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 2.3e-08 63.9 282 28.4
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 2.3e-08 63.9 145 34.5
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 3.0e-08 63.5 154 39.0
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 3.9e-08 63.2 293 27.3
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 6.7e-08 62.4 308 26.9
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 6.7e-08 62.4 286 28.0
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 8.7e-08 62.0 283 27.6
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 8.7e-08 62.0 131 35.9
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 1.5e-07 61.2 258 31.0
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.5e-07 61.2 164 34.1
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.9e-07 60.8 242 28.5
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 2.5e-07 60.5 274 29.6
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 2.5e-07 60.5 306 31.0
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 3.3e-07 60.1 163 29.4
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 3.3e-07 60.1 131 35.1
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 4.3e-07 59.7 281 29.2
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 5.6e-07 59.3 296 28.0
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 9.6e-07 58.5 157 34.4
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 1.3e-06 58.2 298 26.5
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 1.3e-06 58.2 280 28.9
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 2.8e-06 57.0 298 28.2
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 3.7e-06 56.6 307 27.0
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 6.2e-06 55.8 273 28.2
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 8.1e-06 55.5 286 28.0


User provided reference genes

Program Settings