Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 3.9e-99 364.8 181 100.0
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 1.2e-92 343.2 179 93.9
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 2.1e-92 342.4 179 92.7
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.8e-91 339.3 181 92.3
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.0e-86 323.6 181 87.3
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 6.5e-86 320.9 181 86.7
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.4e-85 319.7 179 86.6
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 1.4e-85 319.7 181 86.2
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 3.2e-85 318.5 179 86.6
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 4.2e-85 318.2 179 84.9
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.2e-84 316.6 181 85.1
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 3.6e-84 315.1 181 84.5
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.6e-84 315.1 179 85.5
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 3.6e-84 315.1 179 84.4
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 3.6e-84 315.1 179 85.5
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 6.1e-84 314.3 181 84.0
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 7.9e-84 313.9 181 84.5
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.4e-83 313.2 179 83.8
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 2.3e-83 312.4 179 83.8
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.3e-83 312.4 179 84.4
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 2.3e-83 312.4 181 84.0
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 5.1e-83 311.2 181 82.9
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 8.8e-83 310.5 179 83.2
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 8.8e-83 310.5 168 89.9
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.5e-82 309.7 179 83.2
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 2.0e-82 309.3 181 83.4
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 3.3e-82 308.5 176 85.2
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 4.3e-82 308.1 176 85.2
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 4.3e-82 308.1 176 85.2
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 5.7e-82 307.8 176 84.7
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 5.7e-82 307.8 181 81.8
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 5.7e-82 307.8 176 83.5
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 5.7e-82 307.8 168 89.9
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 5.7e-82 307.8 181 81.8
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 1.3e-81 306.6 179 82.1
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.7e-81 306.2 181 81.8
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.7e-81 306.2 181 81.8
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 2.2e-81 305.8 179 83.2
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 2.8e-81 305.4 181 81.8
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 2.8e-81 305.4 181 81.2
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.7e-81 305.1 179 81.6
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 4.8e-81 304.7 176 84.1
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 4.8e-81 304.7 181 81.8
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 8.2e-81 303.9 177 82.5
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.1e-80 303.5 181 79.6
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 1.1e-80 303.5 181 80.7
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.4e-80 303.1 179 80.4
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.4e-80 303.1 179 81.0
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.4e-80 303.1 181 80.7
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 1.4e-80 303.1 179 83.2
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.8e-80 302.8 177 82.5
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 2.4e-80 302.4 179 80.4
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 3.1e-80 302.0 181 79.6
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 6.9e-80 300.8 176 81.8
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 6.9e-80 300.8 179 79.3
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 6.9e-80 300.8 170 87.1
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 6.9e-80 300.8 182 79.1
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.2e-79 300.1 181 80.7
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.5e-79 299.7 175 81.7
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.5e-79 299.7 176 81.8
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.5e-79 299.7 176 81.2
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.5e-79 299.7 176 81.8
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 2.0e-79 299.3 176 81.2
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 2.6e-79 298.9 177 80.8
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 3.4e-79 298.5 168 85.7
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 4.5e-79 298.1 176 81.8
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 7.7e-79 297.4 176 80.7
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 7.7e-79 297.4 176 80.7
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.0e-78 297.0 169 86.4
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.7e-78 296.2 181 79.6
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 2.2e-78 295.8 182 79.1
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 2.2e-78 295.8 176 80.1
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 2.2e-78 295.8 181 79.0
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 2.9e-78 295.4 176 80.7
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 3.8e-78 295.0 182 78.6
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.1e-77 293.5 177 81.9
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.4e-77 293.1 177 80.8
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.4e-77 293.1 177 80.8
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.4e-77 293.1 177 80.8
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.9e-77 292.7 177 80.8
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 3.2e-77 292.0 166 84.3
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 4.2e-77 291.6 177 80.2
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.2e-77 291.6 181 78.5
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 7.2e-77 290.8 175 81.1
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 9.4e-77 290.4 181 80.7
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.6e-76 289.7 177 80.2
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 2.1e-76 289.3 180 78.9
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.7e-76 288.9 181 78.5
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.7e-76 288.1 181 76.8
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.7e-76 288.1 181 76.8
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 4.7e-76 288.1 180 78.9
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 6.1e-76 287.7 203 72.4
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 7.9e-76 287.3 178 79.2
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.0e-75 287.0 172 80.8
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.0e-75 287.0 172 80.8
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.8e-75 286.2 169 81.7
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 3.9e-75 285.0 169 81.1
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 3.9e-75 285.0 180 78.3
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 6.7e-75 284.3 178 79.2
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 8.8e-75 283.9 168 81.5
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 1.5e-74 283.1 181 76.8
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 2.0e-74 282.7 180 77.8
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 2.0e-74 282.7 179 77.7
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 4.4e-74 281.6 174 79.3
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.7e-74 281.2 174 79.3
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.4e-74 280.8 173 79.8
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 1.3e-73 280.0 168 81.0
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.3e-73 280.0 178 77.0
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 3.7e-73 278.5 183 75.4
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.8e-73 278.1 170 79.4
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 6.3e-73 277.7 169 80.5
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 6.3e-73 277.7 182 75.8
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 6.3e-73 277.7 182 75.8
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.4e-72 276.6 178 76.4
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 4.1e-72 275.0 168 81.5
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.2e-71 273.5 200 69.5
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 1.3e-70 270.0 168 79.2
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 2.9e-70 268.9 177 75.7
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.1e-69 266.9 180 74.4
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.4e-69 266.5 181 74.6
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.9e-69 266.2 178 73.6
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.2e-69 265.4 181 73.5
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.2e-68 263.5 161 79.5
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 2.6e-66 255.8 182 70.3
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 4.4e-66 255.0 179 70.4
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 2.2e-65 252.7 167 70.7
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 2.6e-63 245.7 148 82.4
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 1.3e-62 243.4 150 80.0
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.5e-61 240.0 165 67.9
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 4.2e-61 238.4 258 51.6
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 2.3e-59 232.6 171 63.7
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 3.3e-58 228.8 175 62.9
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.3e-57 226.9 179 66.5
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 7.0e-56 221.1 166 63.9
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 5.7e-50 201.4 168 57.7
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 8.3e-49 197.6 128 77.3
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.3e-41 173.7 172 55.8
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 2.7e-39 166.0 100 84.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.1e-35 152.5 132 63.6
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 4.9e-33 145.2 116 64.7
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.5e-29 133.7 79 79.7
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 4.3e-29 132.1 179 39.1
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.2e-28 130.6 175 40.6
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.4e-26 122.1 69 81.2
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 2.9e-25 119.4 75 78.7
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 2.9e-25 119.4 75 78.7
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 6.0e-23 111.7 62 88.7
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.1e-19 100.9 57 78.9
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 6.8e-19 98.2 100 53.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.8e-18 95.1 54 81.5
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 5.8e-18 95.1 165 35.2
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 7.5e-18 94.7 209 37.3
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 1.9e-16 90.1 58 70.7
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 7.1e-16 88.2 169 33.1
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 2.4e-11 73.2 90 45.6
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 2.6e-10 69.7 45 73.3
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 3.4e-10 69.3 51 68.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 3.8e-09 65.9 38 86.8
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 6.4e-09 65.1 38 78.9
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 6.4e-09 65.1 38 78.9
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.4e-08 63.9 88 44.3
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 5.4e-08 62.0 37 75.7
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 6.0e-07 58.5 43 69.8
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 7.8e-07 58.2 64 48.4
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.3e-06 57.4 63 49.2
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 1.7e-06 57.0 50 58.0
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 3.0e-06 56.2 42 61.9


User provided reference genes

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