Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 6.4e-164 580.9 333 100.0
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 2.4e-163 578.9 332 100.0
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.1e-110 404.1 327 75.5
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 3.7e-103 379.0 329 67.8
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 6.3e-95 351.7 326 65.3
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 2.1e-90 336.7 346 63.9
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 5.9e-85 318.5 335 63.6
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.5e-69 266.2 351 54.1
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 9.5e-67 258.1 350 53.7
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.0e-65 254.6 346 50.6
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.8e-65 253.8 346 50.3
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 2.3e-65 253.4 339 49.6
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 3.4e-64 249.6 340 51.5
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.6e-58 230.7 340 45.3
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.6e-58 230.7 351 46.4
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.8e-57 227.3 351 51.9
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.3e-57 226.9 334 49.1
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 6.8e-57 225.3 340 46.5
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 6.8e-57 225.3 347 42.9
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 2.0e-56 223.8 341 47.8
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 3.4e-56 223.0 341 46.3
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 4.4e-56 222.6 336 46.4
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 7.5e-56 221.9 340 46.2
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 9.8e-56 221.5 338 43.5
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.7e-55 220.7 345 47.0
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 2.2e-55 220.3 332 44.3
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 2.2e-55 220.3 332 44.3
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 3.7e-55 219.5 338 43.8
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 8.3e-55 218.4 342 44.7
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 1.4e-54 217.6 340 43.8
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 2.4e-54 216.9 331 45.9
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.1e-54 216.1 341 44.6
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 4.1e-54 216.1 341 47.2
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 5.4e-54 215.7 340 45.0
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 7.1e-54 215.3 339 44.8
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.1e-54 215.3 339 43.1
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 7.1e-54 215.3 344 48.0
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 9.2e-54 214.9 339 44.2
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.2e-53 214.5 330 47.0
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.2e-53 214.5 341 48.7
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 2.1e-53 213.8 338 44.7
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 2.7e-53 213.4 333 45.9
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 2.7e-53 213.4 338 44.7
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.5e-53 213.0 338 42.3
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 6.0e-53 212.2 346 43.6
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 1.7e-52 210.7 337 45.4
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 2.3e-52 210.3 338 45.3
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 2.3e-52 210.3 339 44.5
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 2.3e-52 210.3 336 44.9
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 3.0e-52 209.9 339 44.0
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.0e-52 209.9 339 44.0
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 5.1e-52 209.1 341 47.5
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 6.6e-52 208.8 344 45.6
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.1e-51 208.0 348 44.8
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.9e-51 207.2 339 46.0
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.9e-51 207.2 339 46.0
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.9e-51 207.2 338 43.8
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.9e-51 207.2 342 45.3
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 1.9e-51 207.2 350 46.3
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 2.5e-51 206.8 335 49.9
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 2.5e-51 206.8 333 46.8
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 2.5e-51 206.8 340 44.4
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 3.3e-51 206.5 344 45.1
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 4.3e-51 206.1 338 45.3
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 9.5e-51 204.9 357 43.1
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 9.5e-51 204.9 340 42.4
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 1.2e-50 204.5 347 44.7
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 1.6e-50 204.1 337 43.9
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 1.6e-50 204.1 339 44.5
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 2.8e-50 203.4 337 42.7
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.1e-49 201.4 351 42.2
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.1e-49 201.4 341 44.6
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 1.4e-49 201.1 337 42.4
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 4.0e-49 199.5 347 42.7
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 5.2e-49 199.1 334 44.0
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 6.8e-49 198.7 337 45.1
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 8.9e-49 198.4 344 43.0
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.2e-48 198.0 348 43.4
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 1.2e-48 198.0 243 62.6
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.2e-48 198.0 334 45.2
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.5e-48 197.6 337 46.3
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 1.5e-48 197.6 337 45.4
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.6e-48 196.8 334 45.8
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 4.4e-48 196.1 337 42.4
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 5.8e-48 195.7 354 41.5
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 5.8e-48 195.7 340 43.8
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 1.3e-47 194.5 332 41.3
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.3e-47 194.5 329 41.3
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 1.7e-47 194.1 329 45.0
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 2.2e-47 193.7 325 43.1
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 2.2e-47 193.7 325 43.1
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.2e-47 193.7 344 43.3
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.9e-47 193.4 337 43.6
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.1e-46 191.4 327 41.9
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.1e-46 191.4 327 41.9
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 1.1e-46 191.4 338 43.8
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 1.1e-46 191.4 338 43.8
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 2.4e-46 190.3 337 40.9
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 1.2e-45 188.0 337 44.5
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 1.6e-45 187.6 332 42.5
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 3.5e-45 186.4 339 41.0
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 7.8e-45 185.3 366 39.1
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 7.8e-45 185.3 351 42.2
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 1.3e-44 184.5 369 42.8
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.7e-44 184.1 337 46.6
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.2e-42 177.9 330 40.0
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 8.1e-42 175.3 334 43.1
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 3.1e-41 173.3 373 37.5
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 1.2e-40 171.4 340 40.9
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 1.3e-39 167.9 347 39.8
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 1.3e-39 167.9 338 41.4
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 2.7e-37 160.2 329 37.1
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 2.1e-34 150.6 163 57.1
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 6.2e-34 149.1 353 34.0
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 3.1e-33 146.7 360 39.7
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 4.0e-33 146.4 291 35.4
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 9.0e-33 145.2 341 39.3
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 2.0e-32 144.1 346 39.3
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 9.9e-32 141.7 313 39.6
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 8.4e-31 138.7 279 42.3
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 8.4e-31 138.7 348 38.8
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 2.1e-29 134.0 284 43.7
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 4.6e-29 132.9 341 36.7
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.3e-28 131.3 131 56.5
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 9.6e-27 125.2 311 38.9
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.6e-26 124.4 298 33.9
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.4e-25 121.3 246 40.7
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.4e-25 121.3 332 34.0
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.4e-25 121.3 97 64.9
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 4.0e-25 119.8 322 33.9
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 1.1e-22 111.7 279 34.4
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.4e-22 111.3 210 41.0
MSTRG.10449 Avicennia marina HOM05D004638 ORTHO05D005443 5.1e-20 102.8 88 71.6
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 9.6e-19 98.6 154 40.3
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.6e-18 97.8 425 29.4
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 2.1e-18 97.4 161 39.8
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.7e-15 87.8 99 46.5
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.1e-14 85.1 333 27.6
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 6.7e-12 75.9 301 27.2
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.1e-11 75.1 75 48.0
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 1.9e-11 74.3 311 29.3
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 3.3e-11 73.6 107 44.9
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 5.7e-11 72.8 62 64.5
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.5e-08 63.2 150 38.0
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.5e-07 59.3 197 38.6
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 7.2e-06 55.8 44 56.8
Nitab4.5_0000047g0210 Nicotiana tabacum HOM05D004638 ORTHO05D005443 9.3e-06 55.5 97 44.3


User provided reference genes

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