Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13901 Avicennia marina HOM05D006875 ORTHO05D008416 4.8e-97 357.8 180 100.0
Migut.E01333 Erythranthe guttata HOM05D006875 ORTHO05D008416 7.9e-60 234.2 173 73.4
SGA_v2.0_scaffold144G35866 Striga asiatica HOM05D006875 ORTHO05D008416 9.7e-58 227.3 173 68.2
Cc08_g04080 Coffea canephora HOM05D006875 ORTHO05D008416 9.7e-50 200.7 180 64.4
SalBow4G1271 Salvia bowleyana HOM05D006875 ORTHO05D008416 5.3e-48 194.9 173 63.6
Peaxi162Scf00185g01627 Petunia axillaris HOM05D006875 ORTHO05D008416 1.0e-46 190.7 177 62.7
PGSC0003DMG400020470 Solanum tuberosum HOM05D006875 ORTHO05D008416 1.0e-46 190.7 178 64.0
Solyc06g066190.3 Solanum lycopersicum HOM05D006875 ORTHO05D008416 1.3e-46 190.3 176 63.1
Sopen06g024670 Solanum pennellii HOM05D006875 ORTHO05D008416 2.9e-46 189.1 176 63.1
Nitab4.5_0000109g0180 Nicotiana tabacum HOM05D006875 ORTHO05D008416 6.5e-46 188.0 178 60.1
CSS0027486 Camellia sinensis var. sinensis HOM05D006875 ORTHO05D008416 6.1e-44 181.4 198 56.1
Nitab4.5_0005761g0030 Nicotiana tabacum HOM05D006875 ORTHO05D008416 1.4e-43 180.3 194 56.2
Dinv29039 Davidia involucrata HOM05D006875 ORTHO05D008416 1.8e-40 169.9 181 58.0
Actinidia18144 Actinidia chinensis HOM05D006875 ORTHO05D008416 4.1e-40 168.7 184 55.4
CiPaw.12G070200 Carya illinoinensis HOM05D006875 ORTHO05D008416 1.7e-38 163.3 181 53.6
Actinidia14761 Actinidia chinensis HOM05D006875 ORTHO05D008416 5.0e-38 161.8 184 53.3
Oeu044464.1 Olea europaea HOM05D006875 ORTHO05D008416 1.1e-37 160.6 94 89.4
HanXRQChr16g0510981 Helianthus annuus HOM05D006875 ORTHO05D008416 5.5e-37 158.3 179 55.9
unitig_0.g2213 Utricularia gibba HOM05D006875 ORTHO05D008416 7.2e-37 157.9 169 57.4
Potri.001G133600 Populus trichocarpa HOM05D006875 ORTHO05D008416 3.0e-35 152.5 186 51.1
Lalb_Chr16g0380861 Lupinus albus HOM05D006875 ORTHO05D008416 5.7e-34 148.3 176 53.4
Sed0011128 Sechium edule HOM05D006875 ORTHO05D008416 2.2e-33 146.4 184 50.5
Duzib205G1866 Durio zibethinus HOM05D006875 ORTHO05D008416 4.8e-33 145.2 180 53.3
Lalb_Chr05g0215561 Lupinus albus HOM05D006875 ORTHO05D008416 4.8e-33 145.2 183 50.8
GSVIVG01011544001 Vitis vinifera HOM05D006875 ORTHO05D008416 6.3e-33 144.8 146 59.6
Prupe.5G024300 Prunus persica HOM05D006875 ORTHO05D008416 8.3e-33 144.4 186 51.1
Sc01g0006090 Simmondsia chinensis HOM05D006875 ORTHO05D008416 8.3e-33 144.4 187 50.8
Medtr5g027470 Medicago truncatula HOM05D006875 ORTHO05D008416 1.1e-32 144.1 186 50.5
Hund14386 Selenicereus undatus HOM05D006875 ORTHO05D008416 9.1e-32 141.0 190 49.5
TPR.G9090 Trifolium pratense HOM05D006875 ORTHO05D008416 9.1e-32 141.0 185 50.3
RcHm_v2.0_Chr7g0212891 Rosa chinensis HOM05D006875 ORTHO05D008416 1.6e-31 140.2 182 51.6
AT5G45590 Arabidopsis thaliana HOM05D006875 ORTHO05D008416 2.7e-31 139.4 184 48.9
Hma1.2p1_0979F.1_g243510 Hydrangea macrophylla HOM05D006875 ORTHO05D008416 5.9e-31 138.3 183 51.4
THA.LOC104806179 Tarenaya hassleriana HOM05D006875 ORTHO05D008416 5.9e-31 138.3 188 48.4
BcaC06g31539 Brassica carinata HOM05D006875 ORTHO05D008416 1.0e-30 137.5 176 50.6
Duzib068G0693 Durio zibethinus HOM05D006875 ORTHO05D008416 1.7e-30 136.7 176 49.4
Ah.12g055650 Amaranthus hybridus HOM05D006875 ORTHO05D008416 3.8e-30 135.6 178 50.0
VMungo1215G2146 Vigna mungo HOM05D006875 ORTHO05D008416 5.0e-30 135.2 178 51.7
Carub.0008s0244 Capsella rubella HOM05D006875 ORTHO05D008416 6.5e-30 134.8 186 48.4
BcaC03g16779 Brassica carinata HOM05D006875 ORTHO05D008416 8.6e-30 134.4 178 50.6
BolC2t10706H Brassica oleracea HOM05D006875 ORTHO05D008416 8.6e-30 134.4 178 50.6
Cfa012555 Carpinus fangiana HOM05D006875 ORTHO05D008416 8.6e-30 134.4 183 48.1
Ca_25148_v3 Cicer arietinum L. HOM05D006875 ORTHO05D008416 8.6e-30 134.4 177 52.5
A06p46520 Brassica napus HOM05D006875 ORTHO05D008416 1.1e-29 134.0 181 48.6
BraA06t27526Z Brassica rapa HOM05D006875 ORTHO05D008416 1.1e-29 134.0 181 48.6
CDE05G0418 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 1.1e-29 134.0 178 48.9
AL8G13090 Arabidopsis lyrata HOM05D006875 ORTHO05D008416 2.5e-29 132.9 184 47.8
Sabra01G0103300 Salix brachista HOM05D006875 ORTHO05D008416 2.5e-29 132.9 219 41.6
arahy.Tifrunner.gnm1.ann1.7H2E39 Arachis hypogaea HOM05D006875 ORTHO05D008416 3.2e-29 132.5 193 47.2
arahy.Tifrunner.gnm1.ann1.J2I619 Arachis hypogaea HOM05D006875 ORTHO05D008416 3.2e-29 132.5 193 47.2
CsaV3_3G030390 Cucumis sativus L. HOM05D006875 ORTHO05D008416 3.2e-29 132.5 181 47.0
Glyma.09G211300 Glycine max HOM05D006875 ORTHO05D008416 3.2e-29 132.5 155 54.2
Nn1g01960 Nelumbo nucifera HOM05D006875 ORTHO05D008416 3.2e-29 132.5 182 49.5
Glyma.01G009800 Glycine max HOM05D006875 ORTHO05D008416 5.5e-29 131.7 143 58.7
Thhalv10001052m.g Eutrema salsugineum HOM05D006875 ORTHO05D008416 7.2e-29 131.3 188 45.7
Gohir.D08G173100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 9.5e-29 131.0 176 48.9
BcaC06g34424 Brassica carinata HOM05D006875 ORTHO05D008416 1.2e-28 130.6 175 49.1
C07p28660 Brassica napus HOM05D006875 ORTHO05D008416 1.2e-28 130.6 175 49.1
BolC7t43404H Brassica oleracea HOM05D006875 ORTHO05D008416 1.2e-28 130.6 175 49.7
MELO3C022766.2 Cucumis melo HOM05D006875 ORTHO05D008416 2.1e-28 129.8 182 47.3
Sp2g10480 Schrenkiella parvula HOM05D006875 ORTHO05D008416 2.1e-28 129.8 182 47.8
CARHR176440 Cardamine hirsuta HOM05D006875 ORTHO05D008416 4.7e-28 128.6 188 45.7
Potri.003G099900 Populus trichocarpa HOM05D006875 ORTHO05D008416 4.7e-28 128.6 184 47.3
Aa31LG9G7450 Aethionema arabicum HOM05D006875 ORTHO05D008416 6.1e-28 128.3 185 48.1
C02p46480 Brassica napus HOM05D006875 ORTHO05D008416 6.1e-28 128.3 178 49.4
EL10Ac5g11986 Beta vulgaris HOM05D006875 ORTHO05D008416 1.0e-27 127.5 181 45.9
Phvul.002G132700 Phaseolus vulgaris HOM05D006875 ORTHO05D008416 1.4e-27 127.1 173 49.7
TAR629G1490 Trochodendron aralioides HOM05D006875 ORTHO05D008416 3.0e-27 125.9 187 47.6
Lj2g0021598 Lotus japonicus HOM05D006875 ORTHO05D008416 5.2e-27 125.2 182 47.8
Atru.chr6.1576 Acer truncatum HOM05D006875 ORTHO05D008416 2.6e-26 122.9 189 46.0
vmacro14218 Vaccinium macrocarpon HOM05D006875 ORTHO05D008416 7.5e-26 121.3 256 37.9
PSO782G2435 Papaver somniferum HOM05D006875 ORTHO05D008416 9.8e-26 120.9 171 46.2
Aqoxy3G02082 Aquilegia oxysepala HOM05D006875 ORTHO05D008416 1.7e-25 120.2 180 47.2
A02p29280 Brassica napus HOM05D006875 ORTHO05D008416 2.8e-25 119.4 80 75.0
BraA02t07958Z Brassica rapa HOM05D006875 ORTHO05D008416 2.8e-25 119.4 80 75.0
Os10g0579500 Oryza sativa ssp. japonica HOM05D006875 ORTHO05D008416 4.9e-25 118.6 94 69.1
PSO063G1678 Papaver somniferum HOM05D006875 ORTHO05D008416 1.4e-24 117.1 176 45.5
TWI23G0606 Tripterygium wilfordii HOM05D006875 ORTHO05D008416 4.1e-24 115.5 185 44.9
Zm00001eb025290 Zea mays HOM05D006875 ORTHO05D008416 9.2e-24 114.4 94 66.0
CANSAT21G2454 Cannabis sativa HOM05D006875 ORTHO05D008416 3.5e-23 112.5 177 45.8
Eucgr.D02619 Eucalyptus grandis HOM05D006875 ORTHO05D008416 3.5e-23 112.5 194 42.3
Thecc.03G314400 Theobroma cacao HOM05D006875 ORTHO05D008416 2.3e-22 109.8 183 42.6
SGA_v2.0_scaffold111G31380 Striga asiatica HOM05D006875 ORTHO05D008416 2.5e-21 106.3 147 44.9
Lsat_1_v5_gn_3_43041 Lactuca sativa HOM05D006875 ORTHO05D008416 5.6e-21 105.1 187 42.2
Ciclev10002495m.g Citrus clementina HOM05D006875 ORTHO05D008416 7.3e-21 104.8 186 41.9
FAN04G1681 Fragaria x ananassa HOM05D006875 ORTHO05D008416 9.5e-21 104.4 181 41.4
FAN08G3065 Fragaria x ananassa HOM05D006875 ORTHO05D008416 9.5e-21 104.4 181 41.4
FAN13G1224 Fragaria x ananassa HOM05D006875 ORTHO05D008416 9.5e-21 104.4 181 41.4
Gohir.A08G152100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 2.8e-20 102.8 176 42.6
Psat2g139680 Pisum sativum HOM05D006875 ORTHO05D008416 1.4e-19 100.5 151 47.0
FvH4_5g23590 Fragaria vesca HOM05D006875 ORTHO05D008416 1.8e-19 100.1 181 40.3
FAN18G3946 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.8e-19 100.1 181 40.3
ECA233G1303 Erigeron canadensis HOM05D000321 ORTHO05D000204 2.3e-19 99.8 65 76.9
FAN18G3512 Fragaria x ananassa HOM05D006875 ORTHO05D008416 2.3e-19 99.8 181 40.3
Cpa.g.c33846 Carica papaya HOM05D006875 ORTHO05D008416 3.0e-19 99.4 153 47.7
Sabra03G0067900 Salix brachista HOM05D006875 ORTHO05D008416 1.2e-18 97.4 179 41.3
Manes.17G011100 Manihot esculenta HOM05D006875 ORTHO05D008416 2.0e-18 96.7 183 40.4
Rhsim07G0136500 Rhododendron simsii HOM05D006875 ORTHO05D008416 4.4e-18 95.5 157 43.3
Haze_08111 Corylus avellana HOM05D006875 ORTHO05D008416 2.2e-17 93.2 153 43.8
ClCG07G002300 Citrullus lanatus HOM05D006875 ORTHO05D008416 4.1e-16 89.0 151 41.1
COL.COLO4_16883 Corchorus olitorius HOM05D006875 ORTHO05D008416 4.1e-16 89.0 55 80.0
Haze_08105 Corylus avellana HOM05D006875 ORTHO05D008416 5.4e-16 88.6 66 68.2
Gorai.004G180500 Gossypium raimondii HOM05D006875 ORTHO05D008416 9.2e-16 87.8 172 39.5
Pp3c9_12060 Physcomitrium patens HOM05D006875 ORTHO05D008416 9.2e-16 87.8 165 37.0
Mapoly0025s0027 Marchantia polymorpha HOM05D006875 ORTHO05D008416 3.5e-15 85.9 137 43.1
HPP92_025490 Vanilla planifolia HOM05D006875 ORTHO05D008416 4.6e-15 85.5 182 37.4
MD00G1000200 Malus domestica HOM05D006875 ORTHO05D008416 1.7e-14 83.6 189 37.6
CDE11G0569 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 3.0e-14 82.8 149 41.6
QL12p000430 Quercus lobata HOM05D006875 ORTHO05D008416 2.5e-13 79.7 147 39.5
ATR0829G201 Amborella trichopoda HOM05D006875 ORTHO05D008416 2.1e-12 76.6 79 51.9
AagrBONN_evm.TU.Sc2ySwM_362.254 Anthoceros agrestis HOM05D006875 ORTHO05D008416 1.8e-11 73.6 70 57.1
SHI45156 Sapria himalayana HOM05D006875 ORTHO05D008416 3.4e-10 69.3 76 50.0
PGR031G1815 Punica granatum HOM05D006875 ORTHO05D008416 4.4e-10 68.9 126 39.7
RcHm_v2.0_Chr1g0382651 Rosa chinensis HOM05D006875 ORTHO05D008416 9.8e-10 67.8 45 71.1
DCAR_004255 Daucus carota HOM05D049898 ORTHO05D008416 2.0e-07 60.1 116 41.4
SEGI_22250 Sequoiadendron giganteum HOM05D006875 ORTHO05D008416 2.7e-07 59.7 52 59.6


User provided reference genes

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