Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1389 Avicennia marina HOM05D004728 ORTHO05D002375 2.5e-89 332.4 207 100.0
MSTRG.1387 Avicennia marina HOM05D004728 ORTHO05D002375 1.3e-53 213.8 193 69.9
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 2.5e-33 146.4 209 48.8
SGA_v2.0_scaffold48G17928 Striga asiatica HOM05D004728 ORTHO05D002375 3.5e-27 125.9 182 56.6
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 4.4e-22 109.0 174 44.3
Migut.C01161 Erythranthe guttata HOM05D004728 ORTHO05D002375 6.4e-21 105.1 141 60.3
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 3.2e-20 102.8 148 39.2
Oeu045992.1 Olea europaea HOM05D004728 ORTHO05D002375 1.6e-19 100.5 150 56.7
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 4.6e-19 99.0 157 44.6
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 3.9e-18 95.9 148 43.2
CiPaw.15G045000 Carya illinoinensis HOM05D004728 ORTHO05D002375 5.1e-18 95.5 143 44.1
MSTRG.1388 Avicennia marina HOM05D004728 ORTHO05D002375 1.9e-17 93.6 140 51.4
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 1.9e-17 93.6 130 48.5
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 1.2e-16 90.9 174 40.2
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.6e-16 90.5 138 47.8
HanXRQChr09g0250741 Helianthus annuus HOM05D004728 ORTHO05D002375 2.1e-16 90.1 136 44.1
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 3.6e-16 89.4 143 46.2
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 3.6e-16 89.4 146 37.0
SGA_v2.0_scaffold52G18993 Striga asiatica HOM05D004728 ORTHO05D002375 3.6e-16 89.4 147 55.8
SGA_v2.0_scaffold24G10482 Striga asiatica HOM05D004728 ORTHO05D002375 6.2e-16 88.6 142 52.8
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.8e-15 87.0 134 47.0
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 2.4e-15 86.7 152 48.0
HanXRQChr17g0556291 Helianthus annuus HOM05D004728 ORTHO05D002375 3.1e-15 86.3 143 46.9
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 4.0e-15 85.9 141 42.6
ECA232G1403 Erigeron canadensis HOM05D000469 ORTHO05D000131 6.8e-15 85.1 121 65.3
EL10Ac1g01137 Beta vulgaris HOM05D004728 ORTHO05D002375 3.4e-14 82.8 165 35.2
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 3.4e-14 82.8 131 47.3
MSTRG.25340 Avicennia marina HOM05D004728 ORTHO05D002375 4.4e-14 82.4 148 44.6
Hund26995 Selenicereus undatus HOM05D004728 ORTHO05D002375 5.8e-14 82.0 217 38.2
Lsat_1_v5_gn_9_73501 Lactuca sativa HOM05D004728 ORTHO05D002375 1.3e-13 80.9 148 44.6
Lj4A728T44 Lonicera japonica HOM05D004728 ORTHO05D002375 1.3e-13 80.9 132 47.0
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 6.4e-13 78.6 189 34.4
SalBow7G1327 Salvia bowleyana HOM05D004728 ORTHO05D002375 6.4e-13 78.6 180 34.4
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 6.4e-13 78.6 120 48.3
vmacro04704 Vaccinium macrocarpon HOM05D004728 ORTHO05D002375 8.4e-13 78.2 143 50.3
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 1.4e-12 77.4 146 46.6
DCAR_012878 Daucus carota HOM05D004728 ORTHO05D002375 1.9e-12 77.0 144 45.1
HanXRQChr17g0561041 Helianthus annuus HOM05D004728 ORTHO05D002375 1.9e-12 77.0 137 33.6
MSTRG.1471 Avicennia marina HOM05D004728 ORTHO05D002375 2.4e-12 76.6 91 59.3
MSTRG.25397 Avicennia marina HOM05D004728 ORTHO05D002375 2.4e-12 76.6 82 64.6
Lsat_1_v5_gn_9_73380 Lactuca sativa HOM05D004728 ORTHO05D002375 3.2e-12 76.3 148 42.6
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 5.4e-12 75.5 159 37.7
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 7.1e-12 75.1 135 39.3
Oeu000784.1 Olea europaea HOM05D004728 ORTHO05D002375 7.1e-12 75.1 128 46.1
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 9.2e-12 74.7 147 40.8
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 1.2e-11 74.3 114 50.0
Lj4A728T43 Lonicera japonica HOM05D004728 ORTHO05D002375 2.1e-11 73.6 176 30.1
Hma1.2p1_1180F.1_g264660 Hydrangea macrophylla HOM05D004728 ORTHO05D002375 2.7e-11 73.2 116 49.1
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 2.7e-11 73.2 141 39.0
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 2.7e-11 73.2 124 46.8
Rhsim07G0205400 Rhododendron simsii HOM05D004728 ORTHO05D002375 2.7e-11 73.2 115 50.4
CiPaw.16G032400 Carya illinoinensis HOM05D004728 ORTHO05D002375 3.5e-11 72.8 122 46.7
Migut.C01096 Erythranthe guttata HOM05D004728 ORTHO05D002375 3.5e-11 72.8 179 33.0
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 3.5e-11 72.8 147 30.6
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 4.6e-11 72.4 166 39.8
DCAR_012879 Daucus carota HOM05D004728 ORTHO05D002375 4.6e-11 72.4 167 40.1
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 7.8e-11 71.6 130 36.2
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.0e-10 71.2 140 37.1
unitig_0.g2111 Utricularia gibba HOM05D004728 ORTHO05D002375 1.3e-10 70.9 145 40.7
HanXRQChr13g0391971 Helianthus annuus HOM05D004728 ORTHO05D002375 3.9e-10 69.3 143 29.4
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 3.9e-10 69.3 137 41.6
unitig_747.g21502 Utricularia gibba HOM05D004728 ORTHO05D002375 3.9e-10 69.3 122 46.7
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 5.1e-10 68.9 150 40.0
ECA247G3235 Erigeron canadensis HOM05D004728 ORTHO05D002375 6.6e-10 68.6 139 37.4
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 8.7e-10 68.2 126 44.4
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 8.7e-10 68.2 130 41.5
Actinidia10350 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.1e-09 67.8 175 35.4
FvH4_5g36280 Fragaria vesca HOM05D004728 ORTHO05D002375 1.1e-09 67.8 85 56.5
FAN04G1034 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.1e-09 67.8 85 56.5
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.1e-09 67.8 183 39.3
Lalb_Chr10g0102541 Lupinus albus HOM05D012119 ORTHO05D002375 1.1e-09 67.8 175 47.4
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 1.5e-09 67.4 122 43.4
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 1.9e-09 67.0 157 38.9
Duzib041G0412 Durio zibethinus HOM05D004728 ORTHO05D002375 1.9e-09 67.0 170 37.6
MD15G1317800 Malus domestica HOM05D004728 ORTHO05D002375 1.9e-09 67.0 186 44.1
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 2.5e-09 66.6 136 39.7
MD15G1317500 Malus domestica HOM05D004728 ORTHO05D002375 3.3e-09 66.2 92 44.6
Thecc.08G100800 Theobroma cacao HOM05D004728 ORTHO05D002375 3.3e-09 66.2 120 45.8
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 4.3e-09 65.9 181 39.2
Prupe.1G524300 Prunus persica HOM05D004728 ORTHO05D002375 4.3e-09 65.9 111 30.6
Duzib093G1766 Durio zibethinus HOM05D004728 ORTHO05D002375 5.6e-09 65.5 128 44.5
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 5.6e-09 65.5 137 42.3
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 5.6e-09 65.5 115 46.1
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 7.3e-09 65.1 105 51.4
AUR62027821 Chenopodium quinoa HOM05D059013 ORTHO05D002375 9.6e-09 64.7 100 33.0
Lsat_1_v5_gn_1_2860 Lactuca sativa HOM05D004728 ORTHO05D002375 9.6e-09 64.7 121 44.6
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 1.2e-08 64.3 145 40.0
arahy.Tifrunner.gnm1.ann1.30DIRF Arachis hypogaea HOM05D012119 ORTHO05D002375 1.6e-08 63.9 144 43.1
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 1.6e-08 63.9 169 35.5
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.1e-08 63.5 166 39.2
Lsat_1_v5_gn_1_2800 Lactuca sativa HOM05D037404 ORTHO05D035140 2.1e-08 63.5 143 33.6
Lsat_1_v5_gn_9_73660 Lactuca sativa HOM05D004728 ORTHO05D045252 2.1e-08 63.5 139 48.9
PSO541G3905 Papaver somniferum HOM05D015253 ORTHO05D023059 2.8e-08 63.2 154 31.2
Prupe.6G194100 Prunus persica HOM05D004728 ORTHO05D002375 2.8e-08 63.2 94 36.2
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 2.8e-08 63.2 132 32.6
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 3.6e-08 62.8 67 61.2
Aqoxy6G00704 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 4.7e-08 62.4 173 35.8
FAN13G0425 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.7e-08 62.4 86 53.5
arahy.Tifrunner.gnm1.ann1.9U5DT8 Arachis hypogaea HOM05D012119 ORTHO05D002375 6.2e-08 62.0 171 38.6
TAR376G0070 Trochodendron aralioides HOM05D015253 ORTHO05D002375 1.1e-07 61.2 142 38.0
Aqoxy476s001 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 1.4e-07 60.8 172 35.5
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 1.4e-07 60.8 113 29.2
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 1.4e-07 60.8 121 41.3
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 1.8e-07 60.5 122 41.0
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.8e-07 60.5 138 38.4
Oeu049688.1 Olea europaea HOM05D004728 ORTHO05D002375 1.8e-07 60.5 134 53.7
Prupe.6G194000 Prunus persica HOM05D004728 ORTHO05D002375 1.8e-07 60.5 69 60.9
Lj4A728G42 Lonicera japonica HOM05D004728 ORTHO05D002375 2.4e-07 60.1 138 29.0
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 2.4e-07 60.1 104 46.2
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.1e-07 59.7 122 41.0
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.1e-07 59.7 138 37.7
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 3.1e-07 59.7 110 52.7
PGSC0003DMG400030843 Solanum tuberosum HOM05D021150 ORTHO05D002375 3.1e-07 59.7 137 46.7
FAN08G2352 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.0e-07 59.3 85 54.1
Solyc04g074780.4 Solanum lycopersicum HOM05D021150 ORTHO05D002375 4.0e-07 59.3 161 42.2
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 5.3e-07 58.9 134 26.9
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 5.3e-07 58.9 134 26.9
HanXRQChr05g0149651 Helianthus annuus HOM05D004728 ORTHO05D002375 5.3e-07 58.9 132 39.4
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 5.3e-07 58.9 124 32.3
Prupe.6G194200 Prunus persica HOM05D004728 ORTHO05D002375 5.3e-07 58.9 49 55.1
arahy.Tifrunner.gnm1.ann1.69RQXC Arachis hypogaea HOM05D012119 ORTHO05D002375 6.9e-07 58.5 71 42.3
arahy.Tifrunner.gnm1.ann1.RDUL0C Arachis hypogaea HOM05D012119 ORTHO05D002375 6.9e-07 58.5 171 38.0
ECA247G0078 Erigeron canadensis HOM05D004728 ORTHO05D002375 6.9e-07 58.5 120 41.7
PSO675G1823 Papaver somniferum HOM05D015253 ORTHO05D023059 6.9e-07 58.5 154 29.2
RcHm_v2.0_Chr7g0238181 Rosa chinensis HOM05D004728 ORTHO05D002375 6.9e-07 58.5 85 54.1
Hund14099 Selenicereus undatus HOM05D004728 ORTHO05D002375 6.9e-07 58.5 125 42.4
FvH4_1g20190 Fragaria vesca HOM05D004728 ORTHO05D002375 9.0e-07 58.2 152 37.5
FAN19G1373 Fragaria x ananassa HOM05D004728 ORTHO05D002375 9.0e-07 58.2 152 37.5
QL02p002263 Quercus lobata HOM05D004728 ORTHO05D002375 9.0e-07 58.2 68 64.7
ECA232G3092 Erigeron canadensis HOM05D004728 ORTHO05D045252 1.2e-06 57.8 116 39.7
Actinidia29600 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.5e-06 57.4 168 36.3
COL.COLO4_11997 Corchorus olitorius HOM05D004728 ORTHO05D002375 2.0e-06 57.0 126 46.0
Lalb_Chr17g0344311 Lupinus albus HOM05D012119 ORTHO05D002375 2.0e-06 57.0 96 33.3
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 2.0e-06 57.0 73 58.9
Eucgr.F00382 Eucalyptus grandis HOM05D004728 ORTHO05D002375 2.6e-06 56.6 90 48.9
HanXRQChr17g0556301 Helianthus annuus HOM05D037404 ORTHO05D035140 3.4e-06 56.2 138 39.9
Migut.L00163 Erythranthe guttata HOM05D004728 ORTHO05D002375 4.4e-06 55.8 128 27.3
Gohir.D05G225700 Gossypium hirsutum HOM05D004728 ORTHO05D002375 4.4e-06 55.8 118 43.2
ECA247G1018 Erigeron canadensis HOM05D037404 ORTHO05D035140 5.8e-06 55.5 120 38.3
Lsat_1_v5_gn_1_2980 Lactuca sativa HOM05D004728 ORTHO05D002375 7.6e-06 55.1 111 49.5
PSO675G0090 Papaver somniferum HOM05D015253 ORTHO05D023059 7.6e-06 55.1 156 25.0
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 7.6e-06 55.1 121 29.8
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 9.9e-06 54.7 135 35.6
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 9.9e-06 54.7 131 38.9


User provided reference genes

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