Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 4.2e-71 271.2 128 100.0
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 4.5e-57 224.6 127 80.3
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.5e-52 209.5 126 76.2
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 1.9e-52 209.1 125 76.0
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 2.5e-52 208.8 127 70.9
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 3.3e-52 208.4 125 74.4
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 5.7e-52 207.6 126 77.0
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.3e-51 206.5 125 73.6
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.6e-51 206.1 120 75.0
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.8e-51 204.5 124 71.8
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 8.2e-51 203.8 127 72.4
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 8.2e-51 203.8 127 72.4
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 8.2e-51 203.8 120 73.3
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.1e-50 203.4 124 73.4
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 1.4e-50 203.0 124 71.0
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.4e-50 202.2 124 71.0
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 3.1e-50 201.8 123 72.4
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.1e-50 201.8 124 71.0
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.1e-50 201.8 127 69.3
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 4.1e-50 201.4 127 71.7
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 4.1e-50 201.4 124 74.2
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 4.1e-50 201.4 127 68.5
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 5.3e-50 201.1 128 69.5
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.3e-50 201.1 120 72.5
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.3e-50 201.1 120 72.5
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.3e-50 201.1 127 71.7
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 5.3e-50 201.1 120 72.5
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 9.0e-50 200.3 127 70.9
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.5e-49 199.5 127 69.3
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.5e-49 199.5 120 71.7
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 2.0e-49 199.1 119 72.3
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.0e-49 199.1 119 71.4
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.0e-49 199.1 119 71.4
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 2.0e-49 199.1 120 70.8
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.0e-49 199.1 120 70.8
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.0e-49 199.1 120 70.8
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.0e-49 199.1 126 68.3
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 2.6e-49 198.7 127 70.1
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 3.4e-49 198.4 127 67.7
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 3.4e-49 198.4 128 68.8
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 4.5e-49 198.0 127 70.1
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 4.5e-49 198.0 126 70.6
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 5.8e-49 197.6 119 70.6
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 5.8e-49 197.6 127 66.9
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 5.8e-49 197.6 127 66.9
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 5.8e-49 197.6 127 66.9
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 5.8e-49 197.6 127 66.9
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 5.8e-49 197.6 127 66.9
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 5.8e-49 197.6 128 70.3
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.6e-49 197.2 125 68.0
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.0e-48 196.8 127 71.7
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.0e-48 196.8 127 71.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.0e-48 196.8 120 71.7
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.0e-48 196.8 125 68.8
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 1.0e-48 196.8 119 73.9
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 1.0e-48 196.8 127 69.3
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.3e-48 196.4 127 66.9
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.7e-48 196.1 125 68.0
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 2.2e-48 195.7 127 66.9
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 2.2e-48 195.7 120 70.0
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 2.2e-48 195.7 123 73.2
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 3.8e-48 194.9 125 70.4
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 5.0e-48 194.5 127 67.7
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 5.0e-48 194.5 127 67.7
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 6.5e-48 194.1 119 70.6
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 6.5e-48 194.1 124 71.8
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 6.5e-48 194.1 125 69.6
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 8.4e-48 193.7 123 73.2
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 8.4e-48 193.7 123 72.4
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 1.1e-47 193.4 124 69.4
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 1.4e-47 193.0 119 68.9
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.9e-47 192.6 124 70.2
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.5e-47 192.2 127 66.1
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 2.5e-47 192.2 124 70.2
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 2.5e-47 192.2 123 71.5
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 3.2e-47 191.8 127 67.7
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 3.2e-47 191.8 127 67.7
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 3.2e-47 191.8 119 70.6
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 4.2e-47 191.4 124 73.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 5.5e-47 191.0 129 65.9
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 5.5e-47 191.0 124 68.5
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.5e-47 191.0 126 67.5
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 5.5e-47 191.0 128 70.3
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 7.1e-47 190.7 120 71.7
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.2e-46 189.9 118 69.5
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 1.6e-46 189.5 127 65.4
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 1.6e-46 189.5 127 68.5
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.6e-46 189.5 125 68.8
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 2.1e-46 189.1 119 68.1
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 2.1e-46 189.1 124 68.5
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.1e-46 189.1 124 69.4
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.7e-46 188.7 130 64.6
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 3.5e-46 188.3 120 66.7
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 3.5e-46 188.3 122 68.9
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 6.1e-46 187.6 124 67.7
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 7.9e-46 187.2 119 68.1
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 7.9e-46 187.2 127 66.9
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.3e-45 186.4 127 63.8
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.3e-45 185.7 127 66.1
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.3e-45 185.7 123 65.0
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 3.0e-45 185.3 127 66.1
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 5.1e-45 184.5 125 68.8
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 8.7e-45 183.7 136 62.5
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.1e-44 183.3 127 65.4
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 1.1e-44 183.3 120 70.0
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.1e-44 183.3 124 65.3
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.9e-44 182.6 125 68.8
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.5e-44 182.2 123 65.0
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 3.3e-44 181.8 127 65.4
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 3.3e-44 181.8 127 65.4
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 3.3e-44 181.8 126 65.1
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 4.3e-44 181.4 140 59.3
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 5.7e-44 181.0 123 65.9
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 7.4e-44 180.6 124 64.5
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.3e-43 179.9 120 62.5
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 1.6e-43 179.5 127 62.2
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.2e-43 179.1 123 65.0
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 2.2e-43 179.1 124 67.7
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.8e-43 178.7 107 74.8
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 3.7e-43 178.3 107 71.0
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 3.7e-43 178.3 109 73.4
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 4.8e-43 177.9 123 65.0
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 8.2e-43 177.2 136 61.0
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 1.4e-42 176.4 125 62.4
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 4.1e-42 174.9 117 65.8
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.5e-41 172.9 128 64.1
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.5e-41 172.9 128 64.1
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.0e-41 172.6 128 64.1
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 2.6e-41 172.2 128 62.5
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 2.6e-41 172.2 133 63.9
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 2.6e-41 172.2 120 62.5
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 3.4e-41 171.8 213 45.1
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 1.7e-40 169.5 119 65.5
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 5.0e-40 167.9 126 58.7
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.1e-39 166.8 124 63.7
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.1e-39 166.8 107 71.0
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.1e-39 166.8 107 71.0
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.2e-38 163.3 102 74.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.1e-38 162.5 118 63.6
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 2.7e-38 162.2 126 57.9
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.0e-36 156.0 106 66.0
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 2.2e-35 152.5 106 66.0
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.4e-34 149.8 106 66.0
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.3e-32 143.3 118 57.6
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.3e-32 143.3 118 57.6
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 1.3e-32 143.3 118 57.6
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.5e-32 141.0 87 71.3
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 8.5e-32 140.6 116 54.3
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 2.2e-27 125.9 133 45.1
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.8e-26 122.9 110 53.6
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 2.8e-19 99.0 115 41.7
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 6.3e-19 97.8 72 63.9
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 5.9e-17 91.3 54 70.4
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 1.3e-16 90.1 67 58.2
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.2e-09 67.0 54 53.7
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 5.9e-09 64.7 48 47.9
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.3e-08 63.5 85 37.6
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.8e-08 62.0 55 52.7


User provided reference genes

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