Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 2.3e-54 215.3 109 100.0
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.8e-20 102.1 96 59.4
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 6.3e-20 100.9 106 53.8
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.1e-19 100.1 111 53.2
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 4.1e-19 98.2 94 59.6
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 5.4e-19 97.8 93 59.1
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 7.0e-19 97.4 113 54.0
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 4.5e-18 94.7 106 50.9
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 5.9e-18 94.4 104 51.9
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 7.8e-18 94.0 100 55.0
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 1.0e-17 93.6 107 56.1
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.7e-17 92.8 92 57.6
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.9e-17 92.0 106 50.9
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 8.6e-17 90.5 105 51.4
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 8.6e-17 90.5 93 54.8
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.9e-16 89.4 82 59.8
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 4.3e-16 88.2 101 53.5
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 5.6e-16 87.8 101 52.5
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 5.6e-16 87.8 101 52.5
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 9.5e-16 87.0 105 48.6
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.5e-16 87.0 88 56.8
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 9.5e-16 87.0 82 57.3
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 9.5e-16 87.0 85 54.1
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.1e-15 85.9 93 51.6
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 2.1e-15 85.9 94 50.0
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.6e-15 85.1 79 60.8
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.7e-15 84.7 88 55.7
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 6.1e-15 84.3 108 47.2
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.0e-14 83.6 89 48.3
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 1.0e-14 83.6 80 58.8
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.4e-14 83.2 100 50.0
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.8e-14 82.8 100 50.0
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 2.3e-14 82.4 89 46.1
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.0e-14 81.6 83 56.6
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 5.2e-14 81.3 89 51.7
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 6.8e-14 80.9 106 45.3
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.2e-13 80.1 80 60.0
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.2e-13 80.1 83 55.4
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.2e-13 80.1 88 53.4
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.2e-13 80.1 98 46.9
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.5e-13 79.7 81 56.8
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.0e-13 79.3 101 46.5
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.6e-13 79.0 89 46.1
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 7.5e-13 77.4 83 54.2
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 9.8e-13 77.0 95 54.7
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.7e-12 76.3 91 51.6
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.7e-12 76.3 80 52.5
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.7e-12 76.3 90 46.7
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 2.2e-12 75.9 98 48.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.2e-12 75.9 84 53.6
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 2.2e-12 75.9 92 51.1
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.9e-12 75.5 84 52.4
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 4.9e-12 74.7 84 53.6
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.1e-11 73.6 99 49.5
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.1e-11 73.6 102 44.1
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.4e-11 73.2 101 45.5
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 2.4e-11 72.4 82 50.0
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 4.1e-11 71.6 93 52.7
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 7.0e-11 70.9 80 51.2
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.2e-10 70.1 83 50.6
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 1.2e-10 70.1 91 47.3
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.2e-10 70.1 102 46.1
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.2e-10 70.1 92 50.0
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.2e-10 70.1 97 49.5
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 1.6e-10 69.7 67 59.7
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.0e-10 69.3 93 49.5
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 2.7e-10 68.9 93 49.5
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.7e-10 68.9 93 49.5
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.7e-10 68.9 93 49.5
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 4.6e-10 68.2 96 44.8
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 6.0e-10 67.8 89 48.3
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 7.8e-10 67.4 98 44.9
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.7e-09 66.2 108 39.8
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 3.0e-09 65.5 94 47.9
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 3.9e-09 65.1 98 43.9
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 3.9e-09 65.1 94 48.9
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 5.0e-09 64.7 69 55.1
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 6.6e-09 64.3 100 46.0
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.5e-08 63.2 82 50.0
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.5e-08 63.2 86 45.3
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 1.9e-08 62.8 60 58.3
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-08 62.4 88 45.5
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-08 62.4 88 45.5
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 2.5e-08 62.4 78 46.2
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.5e-08 62.4 70 51.4
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 3.3e-08 62.0 88 45.5
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 4.3e-08 61.6 65 53.8
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 4.3e-08 61.6 71 52.1
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.3e-08 61.6 93 45.2
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 4.3e-08 61.6 86 45.3
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 5.6e-08 61.2 79 45.6
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 7.3e-08 60.8 86 43.0
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 7.3e-08 60.8 86 43.0
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 7.3e-08 60.8 80 43.8
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 9.5e-08 60.5 61 54.1
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 9.5e-08 60.5 88 45.5
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 9.5e-08 60.5 54 61.1
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 9.5e-08 60.5 61 54.1
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 9.5e-08 60.5 61 54.1
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-07 60.1 54 61.1
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.2e-07 60.1 64 48.4
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.2e-07 60.1 77 49.4
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.6e-07 59.7 86 45.3
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-07 59.7 88 44.3
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 1.6e-07 59.7 81 45.7
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 1.6e-07 59.7 94 39.4
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 1.6e-07 59.7 56 55.4
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 2.1e-07 59.3 86 43.0
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.1e-07 59.3 64 53.1
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 2.8e-07 58.9 85 45.9
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 2.8e-07 58.9 67 47.8
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 4.7e-07 58.2 62 53.2
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.7e-07 58.2 80 45.0
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 4.7e-07 58.2 48 60.4
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 6.2e-07 57.8 86 43.0
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.2e-07 57.8 64 51.6
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 6.2e-07 57.8 90 41.1
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 8.0e-07 57.4 73 47.9
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 8.0e-07 57.4 63 49.2
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.0e-07 57.4 68 48.5
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 8.0e-07 57.4 68 48.5
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 8.0e-07 57.4 63 50.8
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 8.0e-07 57.4 81 44.4
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 8.0e-07 57.4 85 47.1
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.1e-06 57.0 75 46.7
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.4e-06 56.6 64 51.6
Lsat_1_v5_gn_6_24141 Lactuca sativa HOM05D003360 ORTHO05D003759 1.4e-06 56.6 49 57.1
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.8e-06 56.2 74 43.2
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.8e-06 56.2 88 40.9
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.8e-06 56.2 70 48.6
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 1.8e-06 56.2 56 51.8
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.8e-06 56.2 77 44.2
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 1.8e-06 56.2 63 47.6
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 2.3e-06 55.8 73 46.6
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 3.1e-06 55.5 61 49.2
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 3.1e-06 55.5 61 49.2
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 3.1e-06 55.5 67 53.7
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 3.1e-06 55.5 48 60.4
Lsat_1_v5_gn_2_24580 Lactuca sativa HOM05D003360 ORTHO05D003759 3.1e-06 55.5 49 57.1
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.0e-06 55.1 46 58.7
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 5.2e-06 54.7 57 52.6
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 5.2e-06 54.7 100 42.0
MSTRG.5836 Avicennia marina HOM05D003360 ORTHO05D003759 6.8e-06 54.3 47 57.4
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 8.9e-06 53.9 61 47.5
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 8.9e-06 53.9 49 59.2
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 8.9e-06 53.9 61 47.5
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 8.9e-06 53.9 61 47.5
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 8.9e-06 53.9 54 51.9
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 8.9e-06 53.9 101 41.6


User provided reference genes

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