Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 1.1e-105 387.1 272 100.0
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 2.4e-36 156.8 202 49.5
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 3.1e-31 139.8 215 46.0
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.5e-30 137.5 220 45.0
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 9.6e-25 118.2 225 40.9
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 1.3e-24 117.9 222 41.4
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 2.1e-24 117.1 191 44.0
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.8e-23 114.0 208 40.9
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 5.3e-23 112.5 221 40.3
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 6.9e-23 112.1 221 40.3
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 9.0e-23 111.7 199 42.2
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 4.5e-22 109.4 198 40.9
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.3e-21 107.8 221 41.2
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.7e-21 107.5 207 40.1
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 2.2e-21 107.1 206 39.8
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 2.9e-21 106.7 200 41.0
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 1.1e-20 104.8 200 43.0
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 1.1e-20 104.8 200 42.5
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 7.1e-20 102.1 187 40.6
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 2.1e-19 100.5 212 40.1
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 1.0e-18 98.2 197 38.6
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 1.8e-18 97.4 210 40.5
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 3.0e-18 96.7 188 38.8
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 3.0e-18 96.7 197 39.6
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.9e-18 96.3 192 39.6
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 9.6e-17 91.7 212 39.2
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 2.1e-16 90.5 195 37.9
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.8e-16 90.1 197 37.1
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 2.8e-16 90.1 187 39.0
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 6.2e-16 89.0 201 42.3
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 8.1e-16 88.6 206 36.9
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.1e-15 88.2 197 38.1
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 1.4e-15 87.8 194 39.2
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.8e-15 87.4 190 38.4
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 1.8e-15 87.4 182 38.5
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 2.4e-15 87.0 214 37.9
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 2.4e-15 87.0 196 36.7
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 4.0e-15 86.3 215 35.8
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 4.0e-15 86.3 196 37.2
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 5.3e-15 85.9 210 37.1
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 6.9e-15 85.5 211 38.4
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 9.0e-15 85.1 178 39.3
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 1.2e-14 84.7 216 36.6
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 1.2e-14 84.7 201 36.8
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 2.0e-14 84.0 155 41.9
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 2.6e-14 83.6 215 36.7
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 2.6e-14 83.6 178 39.3
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 2.6e-14 83.6 194 34.5
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 4.5e-14 82.8 187 39.0
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 4.5e-14 82.8 196 36.7
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 5.8e-14 82.4 196 36.2
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 7.6e-14 82.0 186 39.8
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 7.6e-14 82.0 220 33.6
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 9.9e-14 81.6 87 49.4
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 1.7e-13 80.9 183 37.2
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 4.9e-13 79.3 189 35.4
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 4.9e-13 79.3 189 35.4
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 8.4e-13 78.6 193 36.3
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.1e-12 78.2 219 32.9
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 1.4e-12 77.8 209 32.5
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 1.9e-12 77.4 183 36.1
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 1.9e-12 77.4 199 36.7
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.2e-12 76.6 214 35.0
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 7.1e-12 75.5 190 35.8
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 7.1e-12 75.5 181 35.4
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 9.3e-12 75.1 181 35.4
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.6e-11 74.3 153 37.3
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 2.1e-11 73.9 192 35.9
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 2.7e-11 73.6 178 34.8
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 2.7e-11 73.6 211 35.5
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 3.5e-11 73.2 183 37.2
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 3.5e-11 73.2 188 36.7
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 4.6e-11 72.8 180 32.2
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 4.6e-11 72.8 149 36.2
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 7.9e-11 72.0 185 34.1
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.0e-10 71.6 181 34.3
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.3e-10 71.2 170 35.9
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 1.8e-10 70.9 191 33.5
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.0e-10 70.1 181 34.3
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 3.0e-10 70.1 220 35.5
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 3.0e-10 70.1 146 37.0
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 5.1e-10 69.3 203 31.0
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 8.7e-10 68.6 186 33.9
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 8.7e-10 68.6 195 31.8
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 1.1e-09 68.2 196 34.7
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 1.1e-09 68.2 214 36.4
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 1.1e-09 68.2 194 35.6
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 1.5e-09 67.8 188 35.6
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 1.5e-09 67.8 196 32.1
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.9e-09 67.4 90 41.1
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 1.9e-09 67.4 188 35.1
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 1.9e-09 67.4 72 50.0
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 4.3e-09 66.2 188 35.1
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 7.4e-09 65.5 188 36.2
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 7.4e-09 65.5 214 30.4
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 9.6e-09 65.1 183 35.5
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 9.6e-09 65.1 192 34.9
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 2.1e-08 63.9 214 27.1
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 2.1e-08 63.9 54 59.3
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 3.7e-08 63.2 54 57.4
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 4.8e-08 62.8 190 32.1
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 2.4e-07 60.5 197 34.0
Mapoly0003s0253 Marchantia polymorpha HOM05D036240 ORTHO05D031199 3.1e-07 60.1 63 49.2
unitig_699.g19788 Utricularia gibba HOM05D006310 ORTHO05D007768 3.1e-07 60.1 41 61.0
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 5.3e-07 59.3 125 36.8
Gohir.D06G054100 Gossypium hirsutum HOM05D001903 ORTHO05D001847 6.9e-07 58.9 192 28.6
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 9.0e-07 58.5 71 52.1
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 9.0e-07 58.5 182 33.0
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 9.0e-07 58.5 194 35.1
Nn2g12150 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.2e-06 58.2 32 78.1
Nn8g39477 Nelumbo nucifera HOM05D001903 ORTHO05D001847 1.2e-06 58.2 48 58.3
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 1.5e-06 57.8 181 30.9
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.5e-06 57.8 82 39.0
Gohir.D13G205300 Gossypium hirsutum HOM05D001903 ORTHO05D001847 2.0e-06 57.4 163 31.9
Gorai.010G063200 Gossypium raimondii HOM05D001903 ORTHO05D001847 2.0e-06 57.4 192 28.1
Lj3g0010604 Lotus japonicus HOM05D001903 ORTHO05D001847 2.0e-06 57.4 65 49.2
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 2.6e-06 57.0 188 34.0
C03p11500 Brassica napus HOM05D001903 ORTHO05D001847 3.4e-06 56.6 172 30.8
Duzib187G1121 Durio zibethinus HOM05D001903 ORTHO05D001847 3.4e-06 56.6 167 31.7
MELO3C004496.2 Cucumis melo HOM05D001903 ORTHO05D001847 4.5e-06 56.2 48 52.1
ECA240G4176 Erigeron canadensis HOM05D001903 ORTHO05D001847 4.5e-06 56.2 64 48.4
Gorai.013G234200 Gossypium raimondii HOM05D001903 ORTHO05D001847 4.5e-06 56.2 127 34.6
Nitab4.5_0007034g0020 Nicotiana tabacum HOM05D001903 ORTHO05D001847 5.8e-06 55.8 53 52.8
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 7.6e-06 55.5 193 30.6
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 7.6e-06 55.5 182 33.0
Hund00522 Selenicereus undatus HOM05D001903 ORTHO05D001847 7.6e-06 55.5 111 36.9
SEGI_04018 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 7.6e-06 55.5 35 65.7
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.0e-05 55.1 63 46.0
AUR62018697 Chenopodium quinoa HOM05D006310 ORTHO05D007768 1.0e-05 55.1 31 80.6
Gohir.A13G199800 Gossypium hirsutum HOM05D001903 ORTHO05D001847 1.0e-05 55.1 161 31.1
SEGI_00832 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 1.0e-05 55.1 35 65.7
SEGI_34370 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 1.0e-05 55.1 62 50.0


User provided reference genes

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