Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 7.5e-98 360.5 183 100.0
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.4e-40 170.2 170 58.8
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 1.2e-34 150.6 147 58.5
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.2e-33 146.4 143 59.4
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.4e-32 143.7 176 53.4
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 1.9e-29 133.3 178 50.0
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 9.6e-29 131.0 163 47.9
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.3e-28 130.6 181 49.2
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 1.3e-28 130.6 160 51.2
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.6e-28 130.2 170 47.6
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.8e-28 128.6 170 47.6
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 8.1e-28 127.9 146 50.0
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.1e-27 127.5 170 47.1
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.4e-27 126.3 159 49.1
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 4.0e-27 125.6 148 51.4
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 6.9e-27 124.8 140 49.3
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 6.9e-27 124.8 156 49.4
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 1.2e-26 124.0 153 50.3
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.0e-26 123.2 159 48.4
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.6e-26 122.9 155 49.7
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 3.4e-26 122.5 158 48.7
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 5.8e-26 121.7 173 43.4
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 5.8e-26 121.7 139 53.2
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 7.6e-26 121.3 155 49.0
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 9.9e-26 120.9 170 45.3
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 9.9e-26 120.9 159 49.1
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 2.2e-25 119.8 163 46.6
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 3.8e-25 119.0 141 47.5
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 3.8e-25 119.0 145 50.3
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 6.4e-25 118.2 164 43.9
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 6.4e-25 118.2 150 49.3
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 8.4e-25 117.9 164 45.1
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 1.4e-24 117.1 151 48.3
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 3.2e-24 115.9 132 52.3
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 4.2e-24 115.5 121 54.5
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 5.5e-24 115.2 155 48.4
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 9.3e-24 114.4 145 47.6
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.6e-23 113.6 149 52.3
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 2.7e-23 112.8 138 45.7
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 3.5e-23 112.5 131 51.1
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 4.6e-23 112.1 185 43.8
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 4.6e-23 112.1 166 41.6
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 6.0e-23 111.7 152 46.7
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 1.0e-22 110.9 164 42.7
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 1.3e-22 110.5 154 46.8
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 1.8e-22 110.2 121 52.9
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 2.3e-22 109.8 149 44.3
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 2.3e-22 109.8 158 43.7
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 3.9e-22 109.0 130 49.2
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 5.1e-22 108.6 146 43.8
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 8.7e-22 107.8 139 43.9
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.1e-21 107.5 133 44.4
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 1.5e-21 107.1 153 46.4
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.5e-21 107.1 167 40.7
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 2.5e-21 106.3 173 41.0
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 2.5e-21 106.3 184 40.2
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 3.3e-21 105.9 172 43.6
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 4.3e-21 105.5 129 48.1
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 5.6e-21 105.1 138 47.1
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 5.6e-21 105.1 173 41.0
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 5.6e-21 105.1 129 48.1
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 9.6e-21 104.4 137 45.3
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 9.6e-21 104.4 169 38.5
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 9.6e-21 104.4 123 47.2
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 1.3e-20 104.0 103 58.3
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.6e-20 103.6 160 39.4
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 1.6e-20 103.6 126 48.4
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.1e-20 103.2 124 50.8
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.1e-20 103.2 160 40.0
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 2.1e-20 103.2 155 43.9
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 3.7e-20 102.4 140 43.6
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 3.7e-20 102.4 140 43.6
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 3.7e-20 102.4 133 45.9
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 3.7e-20 102.4 154 47.4
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 3.7e-20 102.4 154 47.4
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 6.2e-20 101.7 126 48.4
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 8.2e-20 101.3 142 41.5
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.1e-19 100.9 146 43.8
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 1.4e-19 100.5 141 43.3
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 1.4e-19 100.5 160 40.6
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 2.4e-19 99.8 166 39.2
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 4.0e-19 99.0 148 42.6
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 4.0e-19 99.0 154 37.7
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 4.0e-19 99.0 154 46.1
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.3e-19 98.6 165 40.6
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 5.3e-19 98.6 160 41.2
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 5.3e-19 98.6 175 38.9
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 6.9e-19 98.2 101 53.5
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 1.2e-18 97.4 167 39.5
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 1.2e-18 97.4 152 40.1
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 2.0e-18 96.7 153 41.2
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 2.6e-18 96.3 148 41.2
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 2.6e-18 96.3 148 41.2
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 2.6e-18 96.3 149 41.6
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 2.6e-18 96.3 146 41.8
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.6e-18 96.3 146 41.8
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 1.3e-17 94.0 149 39.6
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 2.2e-17 93.2 149 39.6
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 3.8e-17 92.4 155 42.6
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.8e-17 92.4 144 40.3
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 4.9e-17 92.0 129 49.6
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.4e-16 90.5 130 40.0
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.4e-16 90.5 145 46.2
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.5e-16 89.7 149 40.9
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.5e-16 89.7 149 40.9
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.5e-16 89.7 149 40.9
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 5.5e-16 88.6 149 38.3
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 5.5e-16 88.6 149 38.3
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 7.1e-16 88.2 156 39.1
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 7.1e-16 88.2 133 40.6
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 7.1e-16 88.2 146 41.8
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 7.1e-16 88.2 133 41.4
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 1.2e-15 87.4 149 38.3
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.2e-15 87.4 149 40.3
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 2.1e-15 86.7 149 38.3
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 2.7e-15 86.3 140 43.6
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 2.7e-15 86.3 143 39.2
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 3.5e-15 85.9 139 41.7
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 3.5e-15 85.9 139 41.7
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 4.6e-15 85.5 163 38.7
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 4.6e-15 85.5 154 40.9
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 1.0e-14 84.3 139 41.0
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 1.3e-14 84.0 142 42.3
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.8e-14 83.6 138 41.3
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 1.8e-14 83.6 138 41.3
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 1.8e-14 83.6 138 41.3
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 5.1e-14 82.0 149 38.3
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 3.3e-13 79.3 145 35.9
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 7.4e-13 78.2 149 38.3
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 6.3e-12 75.1 64 57.8
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 8.2e-12 74.7 91 51.6
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.1e-11 74.3 153 36.6
Migut.E00712 Erythranthe guttata HOM05D005336 ORTHO05D006511 2.0e-10 70.1 104 50.0
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 2.0e-10 70.1 113 38.1
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 5.9e-10 68.6 144 34.0
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 2.2e-09 66.6 147 34.7
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 2.5e-08 63.2 154 30.5
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 3.2e-08 62.8 84 45.2
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 7.9e-07 58.2 66 48.5
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.8e-06 57.0 126 32.5
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 2.3e-06 56.6 136 31.6


User provided reference genes

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