Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 1.1e-231 806.2 409 100.0
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 4.4e-183 644.8 394 84.5
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 8.4e-174 614.0 417 77.7
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 3.1e-160 568.9 408 74.5
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 3.9e-147 525.4 406 68.2
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.5e-146 523.5 413 69.5
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 3.1e-144 515.8 400 66.8
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.3e-142 510.4 406 67.0
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.7e-142 510.0 404 66.3
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 5.5e-141 505.0 410 65.6
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.2e-140 503.8 410 65.1
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 3.5e-140 502.3 412 64.6
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.0e-139 500.7 417 64.3
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 5.1e-139 498.4 415 64.6
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 5.7e-138 495.0 396 66.9
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 2.8e-137 492.7 398 64.8
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.2e-137 491.1 396 66.7
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.9e-136 488.0 396 66.2
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 6.9e-136 488.0 368 69.3
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 1.2e-135 487.3 396 65.4
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.0e-134 484.2 405 64.7
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 1.7e-134 483.4 396 64.6
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 2.9e-134 482.6 419 62.8
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 3.8e-134 482.3 400 63.8
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 8.5e-134 481.1 459 57.5
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.4e-133 480.3 400 63.2
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 1.9e-133 479.9 410 62.0
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.5e-133 479.6 400 63.2
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 2.5e-133 479.6 408 64.2
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 5.5e-133 478.4 402 63.9
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 7.2e-133 478.0 399 62.9
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 2.1e-132 476.5 403 63.3
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.0e-131 474.2 397 62.7
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 1.8e-131 473.4 403 63.3
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 3.0e-131 472.6 400 64.5
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 3.0e-131 472.6 415 60.5
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 7.4e-130 468.0 396 61.9
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 4.8e-129 465.3 465 55.9
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 8.2e-129 464.5 396 61.6
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 2.4e-128 463.0 408 63.7
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 2.0e-127 459.9 391 62.4
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 2.6e-127 459.5 412 62.4
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 3.4e-127 459.1 405 62.2
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.3e-126 457.2 394 61.2
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 2.2e-126 456.4 418 58.9
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 8.5e-126 454.5 396 59.6
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 1.4e-125 453.8 394 59.1
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 4.2e-125 452.2 413 58.8
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 4.2e-125 452.2 426 58.0
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 5.5e-125 451.8 415 60.5
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 9.4e-125 451.1 396 59.6
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 1.6e-124 450.3 405 59.3
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 2.1e-124 449.9 393 59.8
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 2.7e-124 449.5 349 66.8
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 7.9e-124 448.0 397 57.7
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 2.3e-123 446.4 414 60.1
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 3.3e-122 442.6 355 67.0
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 7.4e-122 441.4 412 58.5
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 6.3e-121 438.3 396 58.1
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.4e-120 437.2 400 58.0
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.4e-120 437.2 338 69.5
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 5.3e-120 435.3 408 57.8
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.2e-119 434.1 412 57.5
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 4.5e-119 432.2 404 57.7
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 4.5e-119 432.2 405 57.5
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 7.7e-119 431.4 408 57.6
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 7.7e-119 431.4 357 64.1
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.3e-118 430.6 326 67.2
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 2.2e-118 429.9 408 57.4
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 5.0e-118 428.7 412 56.6
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 5.0e-118 428.7 327 69.1
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 8.5e-118 427.9 411 56.7
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 4.2e-117 425.6 408 56.6
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 2.1e-116 423.3 400 59.2
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 3.6e-116 422.5 393 59.5
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 4.7e-116 422.2 436 57.6
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 6.1e-116 421.8 393 59.3
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 1.0e-115 421.0 400 59.0
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.4e-115 420.6 381 58.0
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 3.0e-115 419.5 403 56.3
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 8.8e-115 417.9 394 58.1
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 4.4e-114 415.6 419 56.6
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.7e-113 412.5 419 55.6
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 4.8e-113 412.1 408 55.6
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.1e-112 411.0 431 54.1
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 1.1e-112 411.0 413 54.7
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.1e-112 409.1 324 69.1
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 1.6e-111 407.1 412 54.6
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.0e-111 406.8 390 57.9
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 3.2e-109 399.4 354 61.0
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 6.1e-108 395.2 432 54.6
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 2.3e-107 393.3 347 60.2
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.3e-105 387.5 419 53.5
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 1.1e-104 384.4 338 60.9
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 2.4e-104 383.3 320 63.4
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 2.0e-103 380.2 423 53.4
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 2.7e-103 379.8 405 54.1
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.7e-102 377.1 400 54.0
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 5.2e-99 365.5 331 60.1
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.2e-99 365.5 369 60.2
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 8.3e-97 358.2 299 62.2
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.0e-96 355.1 281 70.5
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.6e-95 354.0 459 48.4
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.5e-93 347.4 349 55.6
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 2.5e-93 346.7 344 55.5
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.6e-92 342.8 281 68.7
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 4.0e-91 339.3 296 63.2
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.7e-89 334.0 299 62.2
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.2e-76 288.9 371 48.2
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 1.2e-66 258.1 212 61.8
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 5.4e-64 249.2 220 60.5
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 4.7e-60 236.1 419 38.2
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 5.2e-59 232.6 418 36.8
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 1.1e-56 224.9 320 44.7
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 6.4e-49 199.1 127 82.7
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 8.4e-49 198.7 417 34.3
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 5.6e-45 186.0 141 74.5
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 9.9e-42 175.3 124 73.4
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.4e-24 118.2 128 54.7
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 3.0e-22 110.5 89 64.0
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 8.2e-20 102.4 101 56.4
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 1.8e-19 101.3 104 51.0
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.0e-18 97.8 113 40.7
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 3.8e-17 93.6 154 40.3
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.1e-15 87.8 72 69.4
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.8e-14 84.7 95 57.9
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 1.0e-09 68.9 144 34.7
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.6e-07 61.6 97 40.2


User provided reference genes

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