Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 1.2e-239 832.8 426 100.0
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 8.5e-153 544.3 420 69.0
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 4.2e-152 542.0 420 68.6
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 1.0e-150 537.3 422 67.8
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 6.7e-142 508.1 416 67.1
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.3e-140 503.8 370 69.5
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 1.4e-139 500.4 357 70.3
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 1.2e-138 497.3 409 64.5
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 2.9e-137 492.7 332 74.4
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 1.1e-136 490.7 334 74.3
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 3.2e-136 489.2 359 69.4
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 4.2e-136 488.8 402 64.7
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 5.5e-136 488.4 312 74.4
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 7.2e-136 488.0 325 73.5
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 1.2e-135 487.3 371 68.5
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.1e-135 486.5 312 73.7
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.7e-135 486.1 312 74.0
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 3.0e-134 482.6 366 66.9
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 1.2e-133 480.7 382 65.7
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 2.6e-133 479.6 398 64.8
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 2.6e-133 479.6 420 61.9
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 4.4e-133 478.8 323 73.1
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 5.7e-133 478.4 362 67.4
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 1.3e-132 477.2 399 64.4
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.7e-132 476.9 405 62.7
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 2.4e-131 473.0 350 68.0
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 3.1e-131 472.6 420 58.6
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 1.2e-130 470.7 490 55.9
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 2.0e-130 469.9 378 65.9
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 4.5e-130 468.8 323 71.8
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 2.9e-129 466.1 326 71.8
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 8.5e-129 464.5 311 72.3
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 8.5e-129 464.5 319 72.1
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 1.1e-128 464.2 379 63.1
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 1.1e-128 464.2 378 62.7
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 1.9e-128 463.4 422 57.3
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 1.6e-127 460.3 317 71.9
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 3.6e-127 459.1 353 66.3
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 4.7e-127 458.8 413 59.3
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 4.7e-127 458.8 418 58.6
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 4.7e-127 458.8 415 59.5
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 4.7e-127 458.8 437 58.8
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 6.1e-127 458.4 334 67.7
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 8.0e-127 458.0 430 57.9
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 2.3e-126 456.4 373 63.8
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 5.2e-126 455.3 414 59.4
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 6.8e-126 454.9 398 58.8
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 2.0e-125 453.4 370 63.0
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 3.4e-125 452.6 318 68.2
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 1.7e-124 450.3 340 68.8
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 4.8e-124 448.7 425 58.6
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 1.8e-123 446.8 300 71.7
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 2.4e-123 446.4 421 57.2
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 3.1e-123 446.0 286 75.2
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 3.5e-122 442.6 342 64.3
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 5.9e-122 441.8 327 66.1
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.0e-121 441.0 321 65.7
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 1.7e-121 440.3 329 69.3
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.3e-121 439.9 308 69.8
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.9e-121 439.5 329 66.0
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 2.9e-121 439.5 391 57.3
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 8.6e-121 438.0 311 66.6
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.5e-120 437.2 383 61.1
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.5e-120 437.2 335 66.6
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.5e-120 436.4 329 66.3
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.3e-120 436.0 317 67.8
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 5.5e-120 435.3 321 65.7
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 2.8e-119 433.0 413 56.7
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 1.0e-118 431.0 416 54.8
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.8e-118 430.3 387 58.7
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.5e-117 427.2 301 67.4
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.7e-116 423.7 428 55.8
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 4.9e-116 422.2 414 56.8
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 4.9e-116 422.2 417 53.7
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 6.3e-116 421.8 348 61.2
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 7.0e-115 418.3 390 56.7
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 9.2e-115 417.9 294 70.7
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 3.5e-114 416.0 388 57.2
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 4.5e-114 415.6 406 55.7
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 4.5e-114 415.6 394 55.3
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 5.6e-112 408.7 310 66.5
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 3.6e-111 406.0 287 70.4
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 4.7e-111 405.6 317 63.7
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 4.0e-110 402.5 314 62.1
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 8.9e-110 401.4 371 57.1
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 1.3e-105 387.5 318 60.1
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 2.5e-104 383.3 310 66.1
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.2e-103 380.9 468 48.1
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 2.1e-103 380.2 339 62.8
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 6.2e-103 378.6 294 61.9
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 1.1e-102 377.9 258 70.2
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 7.5e-101 371.7 345 55.7
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.9e-99 367.1 291 64.6
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 1.6e-98 364.0 390 52.1
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.3e-97 360.9 329 57.4
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 5.1e-97 359.0 284 64.1
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 2.0e-85 320.5 233 69.1
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.3e-80 303.1 316 54.1
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 1.6e-79 300.8 375 49.1
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 1.4e-75 287.7 209 68.4
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 4.3e-72 276.2 274 60.9
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 6.2e-71 272.3 296 46.6
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 1.2e-69 268.1 211 63.5
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 2.0e-69 267.3 273 52.7
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 8.4e-68 261.9 242 57.0
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 5.4e-67 259.2 281 51.2
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 3.1e-62 243.4 160 72.5
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 8.4e-60 235.3 200 58.5
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.1e-58 230.7 155 71.0
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 2.5e-51 207.2 193 52.8
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 2.7e-50 203.8 297 40.1
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 8.7e-49 198.7 242 43.4
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 6.7e-41 172.6 147 59.9
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 4.8e-39 166.4 196 48.5
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 1.1e-35 155.2 191 48.2
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 1.1e-35 155.2 147 52.4
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 6.1e-34 149.4 112 67.9
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 2.9e-28 130.6 232 38.8
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 1.4e-25 121.7 82 69.5
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 1.1e-24 118.6 68 85.3
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 2.0e-24 117.9 190 40.5
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 2.8e-23 114.0 209 38.3
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 3.7e-23 113.6 150 44.7
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 3.7e-23 113.6 73 78.1
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 8.2e-23 112.5 184 39.1
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 1.8e-22 111.3 71 73.2
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.8e-22 111.3 224 33.9
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 1.8e-22 111.3 185 41.1
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 4.1e-22 110.2 78 70.5
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.2e-21 108.6 337 27.0
Pp3c9_21990 Physcomitrium patens HOM05D005158 ORTHO05D005510 2.2e-20 104.4 318 28.3
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 3.8e-20 103.6 63 76.2
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 6.5e-20 102.8 109 53.2
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 3.0e-17 94.0 94 51.1
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 2.0e-16 91.3 186 32.3
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 2.2e-15 87.8 98 50.0
Mapoly0003s0267 Marchantia polymorpha HOM05D032652 ORTHO05D005510 3.1e-14 84.0 341 26.1
SMO263G0001 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 9.1e-14 82.4 275 27.3
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 1.2e-13 82.0 65 64.6
SMO118G0092 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 7.7e-13 79.3 274 26.6
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 1.1e-11 75.5 260 25.4
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 1.1e-11 75.5 58 58.6
Pp3c15_24210 Physcomitrium patens HOM05D005158 ORTHO05D005510 1.5e-11 75.1 261 27.6
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 9.4e-11 72.4 259 25.9
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 1.6e-10 71.6 288 22.9
Aqoxy2G01678 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 2.2e-07 61.2 65 49.2
CBR_g49491 Chara braunii HOM05D005158 ORTHO05D005510 4.9e-07 60.1 188 23.4


User provided reference genes

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