Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 5.2e-150 534.3 254 100.0
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.9e-107 392.9 256 74.2
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.6e-103 379.8 254 70.9
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 2.7e-98 362.5 245 69.8
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.0e-92 344.0 230 72.6
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.3e-92 343.6 253 68.0
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 2.9e-92 342.4 260 66.2
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 6.5e-92 341.3 259 64.9
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.4e-91 340.1 261 66.3
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.9e-91 339.7 261 66.3
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 7.2e-91 337.8 260 64.6
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.2e-90 337.0 237 70.5
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.2e-90 337.0 237 70.5
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.1e-90 336.3 257 66.5
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.1e-88 330.5 252 64.7
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 1.1e-88 330.5 248 65.3
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 2.0e-88 329.7 223 70.9
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 3.3e-88 328.9 260 63.1
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 2.8e-87 325.9 261 64.0
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.4e-86 322.8 255 63.1
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.1e-86 322.4 247 63.6
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.1e-86 322.4 226 70.4
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 5.3e-86 321.6 224 71.0
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 7.0e-86 321.2 255 63.9
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.2e-85 320.5 224 70.5
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.6e-85 320.1 253 63.2
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.6e-85 320.1 260 63.5
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.6e-85 320.1 256 62.9
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.5e-85 318.5 179 81.6
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 5.9e-85 318.2 230 68.7
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 7.7e-85 317.8 256 62.5
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 7.7e-85 317.8 249 63.9
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.0e-84 317.4 214 72.4
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.0e-84 317.4 178 80.3
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.7e-84 316.6 262 63.0
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 2.2e-84 316.2 257 59.9
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.9e-84 315.8 261 60.9
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.9e-84 315.8 255 63.1
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 3.8e-84 315.5 261 63.2
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.8e-84 315.5 261 63.2
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 5.0e-84 315.1 260 60.4
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.5e-84 314.7 266 58.3
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 6.5e-84 314.7 176 79.5
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 6.5e-84 314.7 244 63.9
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.1e-83 313.9 263 58.6
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.5e-83 313.5 262 60.3
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.9e-83 313.2 268 60.1
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.9e-83 313.2 248 66.5
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.9e-83 313.2 266 58.3
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 2.5e-83 312.8 266 58.6
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.5e-83 312.8 257 63.4
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.2e-83 312.0 260 59.6
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 7.2e-83 311.2 258 61.2
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.2e-82 310.5 182 76.4
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.2e-82 310.5 253 63.2
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 4.7e-82 308.5 260 60.8
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 6.1e-82 308.1 256 60.9
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 6.1e-82 308.1 243 60.5
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 6.1e-82 308.1 260 59.6
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.8e-81 306.6 250 63.2
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.0e-81 305.8 250 63.6
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 3.0e-81 305.8 220 68.2
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 5.2e-81 305.1 174 78.2
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 6.7e-81 304.7 257 60.7
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 8.8e-81 304.3 184 75.5
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 8.8e-81 304.3 184 75.0
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.1e-80 303.9 214 66.8
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.1e-80 303.9 223 65.0
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 4.4e-80 302.0 257 61.5
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 7.5e-80 301.2 178 75.8
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 9.7e-80 300.8 259 58.7
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.7e-79 300.1 250 60.0
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.7e-79 300.1 258 57.4
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.7e-79 300.1 258 59.3
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.3e-79 298.1 248 60.1
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 8.2e-79 297.7 265 59.2
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 8.2e-79 297.7 261 58.6
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 8.2e-79 297.7 259 60.6
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 1.1e-78 297.4 192 70.8
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.1e-78 297.4 178 74.7
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.4e-78 297.0 175 76.0
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.8e-78 296.6 191 69.6
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.8e-78 296.6 208 68.8
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.8e-78 296.6 208 68.8
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 3.1e-78 295.8 262 57.6
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 3.1e-78 295.8 261 57.5
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 4.1e-78 295.4 291 52.9
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 5.3e-78 295.0 216 65.7
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 5.3e-78 295.0 258 60.1
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 7.0e-78 294.7 257 58.8
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 9.1e-78 294.3 263 59.7
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.2e-77 293.9 268 56.3
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 2.7e-77 292.7 260 56.5
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 2.7e-77 292.7 253 58.5
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 3.5e-77 292.4 261 55.9
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 4.5e-77 292.0 264 58.0
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.9e-77 291.6 260 56.2
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 7.7e-77 291.2 257 58.0
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.0e-76 290.8 260 57.7
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.0e-76 290.8 217 65.9
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 1.0e-76 290.8 196 69.9
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.3e-76 290.4 256 57.4
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.3e-76 290.4 255 56.5
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.7e-76 290.0 218 64.7
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.7e-76 290.0 201 69.7
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.2e-76 289.7 260 55.8
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 3.8e-76 288.9 177 76.3
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 5.0e-76 288.5 196 67.3
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 6.5e-76 288.1 192 67.7
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 6.5e-76 288.1 253 59.3
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.9e-75 286.6 168 76.8
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.9e-75 286.6 180 73.9
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.2e-75 285.8 217 64.5
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.6e-74 283.5 253 54.9
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.6e-74 283.5 215 64.2
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 2.7e-74 282.7 169 75.7
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 6.1e-74 281.6 257 54.5
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 2.3e-73 279.6 253 56.5
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 4.5e-69 265.4 177 71.2
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 1.0e-68 264.2 147 81.0
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.1e-67 260.8 150 78.0
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 1.5e-67 260.4 251 54.2
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 8.8e-65 251.1 228 56.6
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 5.7e-64 248.4 192 60.9
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 8.3e-63 244.6 140 77.1
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.4e-62 243.8 137 78.8
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.1e-62 242.3 260 49.6
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.6e-61 240.4 137 78.1
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 4.5e-61 238.8 235 54.0
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 6.6e-60 235.0 166 62.0
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.1e-59 234.2 218 54.6
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.3e-59 232.6 176 64.8
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.8e-58 229.6 262 48.1
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.7e-58 228.8 152 69.7
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.0e-57 226.1 164 61.0
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 1.5e-56 223.8 164 59.8
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.1e-54 217.6 166 57.2
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.8e-54 216.9 143 66.4
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 2.4e-54 216.5 168 57.7
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.6e-53 213.8 166 57.2
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.3e-52 210.7 254 47.2
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 3.0e-52 209.5 255 48.2
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.2e-50 204.1 264 44.7
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 3.7e-47 192.6 111 77.5
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 2.3e-36 156.8 143 58.0
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 9.5e-35 151.4 133 56.4
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.2e-32 144.4 93 69.9
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 1.7e-31 140.6 84 76.2
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 8.4e-31 138.3 93 69.9
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.9e-30 137.1 146 49.3
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.1e-27 127.9 85 61.2
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.1e-25 121.3 213 30.5
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 3.1e-25 119.8 78 73.1
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 6.9e-25 118.6 63 84.1
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 4.9e-23 112.5 141 38.3
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 9.3e-22 108.2 73 69.9
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.3e-20 103.6 65 67.7
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.3e-19 99.8 67 65.7
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.4e-17 93.6 86 51.2
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.1e-13 80.5 51 66.7
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.0e-12 78.2 48 66.7
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.3e-11 72.8 51 60.8
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 4.3e-11 72.8 51 60.8
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 8.1e-10 68.6 39 74.4
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 5.3e-09 65.9 107 43.0
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.8e-08 62.4 43 62.8
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 1.9e-06 57.4 37 73.0


User provided reference genes

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