Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 8.2e-105 383.6 182 100.0
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 2.5e-45 186.0 137 62.8
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 3.6e-44 182.2 137 62.8
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 6.0e-39 164.9 135 59.3
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.3e-37 158.7 175 49.7
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 8.1e-36 154.5 141 50.4
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 2.3e-35 152.9 136 54.4
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 6.8e-35 151.4 126 56.3
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 8.9e-35 151.0 137 53.3
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 8.9e-35 151.0 137 53.3
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.2e-34 150.6 134 53.7
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 1.5e-34 150.2 134 53.0
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.6e-34 149.4 133 52.6
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 4.4e-34 148.7 133 52.6
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 5.8e-34 148.3 133 51.9
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 5.8e-34 148.3 138 50.7
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 7.6e-34 147.9 141 50.4
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 7.6e-34 147.9 128 56.2
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 9.9e-34 147.5 135 52.6
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.3e-33 147.1 127 55.1
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.7e-33 146.7 133 51.9
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.7e-33 146.7 139 46.8
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 3.8e-33 145.6 135 50.4
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 4.9e-33 145.2 143 51.0
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 4.9e-33 145.2 133 51.9
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.9e-33 145.2 136 50.7
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 6.4e-33 144.8 132 52.3
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 6.4e-33 144.8 134 50.7
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 6.4e-33 144.8 135 50.4
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 8.4e-33 144.4 133 50.4
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.4e-33 144.4 138 47.8
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.4e-33 144.4 138 47.8
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 8.4e-33 144.4 134 50.0
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 8.4e-33 144.4 138 50.0
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 8.4e-33 144.4 136 50.7
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.1e-32 144.1 135 50.4
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.4e-32 143.7 130 52.3
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.4e-32 143.7 135 48.9
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.4e-32 143.7 140 48.6
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.4e-32 143.7 141 51.8
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.9e-32 143.3 133 51.9
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 3.2e-32 142.5 145 47.6
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.1e-32 142.1 137 48.2
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 5.4e-32 141.7 133 51.1
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 5.4e-32 141.7 135 48.9
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.4e-32 141.7 138 49.3
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 7.1e-32 141.4 133 50.4
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 1.2e-31 140.6 131 51.1
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.2e-31 140.6 138 48.6
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.2e-31 140.6 137 47.4
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.2e-31 140.6 138 50.7
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.2e-31 140.6 146 49.3
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 1.6e-31 140.2 135 48.9
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 2.1e-31 139.8 134 49.3
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 2.1e-31 139.8 134 49.3
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.1e-31 139.8 139 46.0
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 2.7e-31 139.4 136 50.0
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 3.5e-31 139.0 128 50.8
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.5e-31 139.0 137 46.7
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 4.6e-31 138.7 129 48.8
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 4.6e-31 138.7 134 50.7
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 4.6e-31 138.7 132 48.5
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 6.0e-31 138.3 156 45.5
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 6.0e-31 138.3 133 48.1
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 6.0e-31 138.3 138 47.8
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 6.0e-31 138.3 133 54.9
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 6.0e-31 138.3 141 48.9
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 6.0e-31 138.3 133 47.4
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 6.0e-31 138.3 136 48.5
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 6.0e-31 138.3 138 47.8
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 7.8e-31 137.9 133 48.9
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 7.8e-31 137.9 135 47.4
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.0e-30 137.5 137 48.2
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 1.0e-30 137.5 137 48.9
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.0e-30 137.5 138 47.1
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.3e-30 137.1 134 48.5
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.3e-30 137.1 152 48.0
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.3e-30 137.1 145 45.5
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.3e-30 137.1 138 47.8
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.3e-30 137.1 134 49.3
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 1.7e-30 136.7 134 48.5
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 2.3e-30 136.3 133 49.6
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 2.3e-30 136.3 135 46.7
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 2.3e-30 136.3 135 46.7
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 3.0e-30 136.0 133 50.4
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 3.0e-30 136.0 133 48.1
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 3.9e-30 135.6 133 48.9
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.9e-30 135.6 133 48.9
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 3.9e-30 135.6 135 52.6
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 3.9e-30 135.6 136 49.3
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 5.1e-30 135.2 133 50.4
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 8.6e-30 134.4 131 49.6
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.6e-30 134.4 140 46.4
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.6e-30 134.4 131 49.6
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.5e-29 133.7 129 47.3
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.9e-29 133.3 135 46.7
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-29 133.3 135 50.4
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 3.3e-29 132.5 135 47.4
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 3.3e-29 132.5 132 50.0
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 3.3e-29 132.5 132 50.0
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 3.3e-29 132.5 132 50.0
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 4.3e-29 132.1 141 48.2
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 4.3e-29 132.1 141 48.2
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 4.3e-29 132.1 135 46.7
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 4.3e-29 132.1 135 46.7
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 5.6e-29 131.7 133 48.9
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 9.6e-29 131.0 135 47.4
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.2e-28 130.6 133 46.6
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.2e-28 130.6 138 47.8
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 1.2e-28 130.6 137 48.9
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-28 130.2 133 50.4
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.1e-28 129.8 135 47.4
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.1e-28 129.8 134 48.5
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 2.1e-28 129.8 132 48.5
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.8e-28 129.4 132 49.2
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 2.8e-28 129.4 132 47.7
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 2.8e-28 129.4 135 45.9
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 3.6e-28 129.0 135 48.9
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 8.1e-28 127.9 135 46.7
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.1e-27 127.5 135 45.2
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.8e-27 126.7 133 49.6
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 1.8e-27 126.7 133 48.9
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.4e-27 126.3 188 36.2
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.4e-27 126.3 133 49.6
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 4.0e-27 125.6 133 45.1
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 6.9e-27 124.8 94 57.4
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 6.9e-27 124.8 135 43.0
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 8.9e-27 124.4 134 49.3
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.2e-26 124.0 133 48.1
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 1.2e-26 124.0 147 45.6
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.5e-26 123.6 133 48.9
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 4.4e-26 122.1 137 45.3
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 7.6e-26 121.3 138 44.9
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 7.6e-26 121.3 149 45.0
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 9.9e-26 120.9 134 44.0
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 3.8e-25 119.0 140 42.1
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 8.4e-25 117.9 132 40.2
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.1e-24 117.5 94 55.3
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 7.1e-24 114.8 136 45.6
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 9.3e-24 114.4 124 48.4
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 9.3e-24 114.4 136 44.9
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 1.6e-23 113.6 138 41.3
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.1e-23 113.2 93 57.0
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 2.7e-23 112.8 134 45.5
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.7e-23 112.8 138 43.5
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 4.6e-23 112.1 145 38.6
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.5e-21 107.1 156 34.0
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.9e-21 106.7 122 50.0
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 3.1e-19 99.4 111 46.8
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 2.6e-18 96.3 129 38.0
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 9.3e-16 87.8 49 69.4
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.0e-14 84.3 132 34.8
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 3.0e-14 82.8 132 37.9
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 3.0e-14 82.8 70 54.3
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 8.7e-14 81.3 130 37.7
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.1e-13 80.9 106 40.6
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.8e-12 76.3 68 45.6
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 4.8e-12 75.5 49 59.2
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 6.2e-12 75.1 123 35.0
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 9.0e-11 71.2 97 41.2
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.6e-10 69.7 105 39.0
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 9.9e-10 67.8 59 55.9
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.3e-09 67.4 37 64.9
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 6.0e-07 58.5 127 32.3
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 3.9e-06 55.8 66 42.4


User provided reference genes

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