Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 0.0e+00 1241.9 615 100.0
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.1e-302 1042.7 615 81.8
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 5.7e-267 924.1 654 70.0
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 2.6e-264 915.2 619 72.9
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 2.0e-259 899.0 617 73.3
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.1e-257 893.3 621 72.3
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.0e-247 860.1 613 70.3
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-247 859.8 625 70.1
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.9e-247 858.6 627 69.7
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 7.2e-246 854.0 622 67.7
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 9.4e-246 853.6 614 69.7
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 3.0e-244 848.6 624 67.0
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.1e-241 840.1 665 64.2
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 5.9e-240 834.3 619 66.9
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 5.9e-240 834.3 630 66.5
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 3.8e-239 831.6 630 66.3
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 6.1e-237 824.3 623 66.1
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.0e-236 823.5 614 67.8
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.4e-236 823.2 619 66.6
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.3e-236 822.4 615 67.5
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.3e-236 822.4 622 67.4
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 3.0e-236 822.0 615 67.6
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 3.0e-236 822.0 619 67.0
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 5.2e-236 821.2 615 67.5
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 5.2e-236 821.2 617 64.8
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.2e-235 820.1 613 66.9
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 3.4e-235 818.5 618 64.6
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 1.8e-233 812.8 618 66.5
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 1.8e-233 812.8 617 64.2
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 1.8e-233 812.8 645 62.9
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 2.4e-233 812.4 574 71.1
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.6e-232 809.7 616 66.7
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.0e-231 807.0 603 66.5
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.7e-231 806.2 615 66.3
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 5.0e-231 804.7 639 63.2
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 2.5e-230 802.4 619 64.9
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 9.5e-230 800.4 612 66.3
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.6e-229 799.7 575 70.1
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 1.8e-228 796.2 618 65.4
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 4.0e-228 795.0 623 62.8
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 2.0e-227 792.7 623 63.4
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 2.6e-227 792.3 597 66.7
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 5.7e-227 791.2 614 65.5
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 7.5e-227 790.8 602 66.3
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.7e-226 789.6 623 61.8
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 1.7e-226 789.6 620 62.7
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 8.3e-226 787.3 665 59.1
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 2.4e-225 785.8 618 63.9
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 4.6e-224 781.6 619 63.5
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 1.7e-223 779.6 617 64.0
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 1.7e-223 779.6 604 64.9
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 2.3e-223 779.2 622 62.5
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 5.0e-223 778.1 732 57.9
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 1.5e-222 776.5 619 63.5
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.6e-221 773.1 619 62.8
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 4.7e-221 771.5 601 64.2
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 9.8e-219 763.8 626 62.0
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 1.3e-218 763.5 621 63.1
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 2.9e-218 762.3 620 61.1
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 3.7e-218 761.9 622 61.1
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 6.4e-218 761.1 621 62.2
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 8.3e-218 760.8 620 62.6
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 9.2e-217 757.3 616 62.5
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 3.5e-216 755.4 635 61.3
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 4.6e-216 755.0 618 60.8
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 7.8e-216 754.2 596 63.3
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.1e-214 750.4 602 62.0
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.9e-214 749.6 605 63.0
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 3.3e-214 748.8 611 61.4
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 9.5e-214 747.3 620 61.3
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 9.5e-214 747.3 625 61.0
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 1.2e-213 746.9 591 62.8
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 2.8e-213 745.7 611 60.6
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 3.6e-213 745.3 732 53.8
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 1.4e-212 743.4 594 63.1
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 8.9e-212 740.7 609 62.4
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 4.9e-210 734.9 620 60.8
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 2.4e-209 732.6 601 62.9
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 7.1e-209 731.1 611 60.2
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 8.6e-207 724.2 602 60.5
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 3.3e-206 722.2 593 60.9
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 4.3e-206 721.8 602 60.6
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.3e-206 721.8 625 59.5
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 5.6e-206 721.5 593 60.7
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 7.3e-206 721.1 603 60.9
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 3.6e-205 718.8 591 60.9
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.4e-204 716.1 632 59.0
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 3.4e-203 712.2 609 59.9
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 1.1e-201 707.2 643 57.4
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 3.2e-201 705.7 615 59.5
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.1e-200 703.0 615 59.3
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 5.2e-196 688.3 681 53.6
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.7e-194 683.3 632 57.3
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 1.7e-194 683.3 615 56.7
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 6.4e-194 681.4 624 57.5
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 7.8e-192 674.5 510 65.5
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.7e-191 673.3 639 56.2
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 1.9e-190 669.8 626 55.0
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.9e-186 656.0 628 53.0
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 2.5e-182 642.9 492 66.1
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 3.4e-179 632.5 618 54.0
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 3.9e-175 619.0 601 53.6
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 2.6e-171 606.3 604 52.5
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 2.2e-170 603.2 625 50.9
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 5.5e-169 598.6 604 51.7
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.1e-158 564.3 626 51.3
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.5e-139 499.2 417 63.3
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.8e-135 487.3 408 63.7
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 1.5e-134 484.2 324 69.4
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 2.8e-133 479.9 435 57.7
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.7e-130 470.7 400 62.8
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 2.9e-130 469.9 337 65.9
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.2e-129 466.5 408 61.8
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.4e-126 456.4 422 60.2
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.4e-124 450.3 422 59.2
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.5e-123 446.0 417 57.8
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.8e-117 426.8 388 55.9
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.8e-116 424.1 405 57.8
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.2e-111 406.0 441 48.5
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.6e-107 394.4 427 52.5
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 4.6e-107 392.9 451 47.9
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 2.0e-86 324.3 575 32.9
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 8.4e-85 318.9 590 32.7
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 8.4e-85 318.9 205 74.1
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 3.2e-84 317.0 510 39.2
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 1.3e-66 258.5 248 54.4
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 3.0e-66 257.3 522 30.1
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.5e-62 245.0 590 28.6
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 8.7e-58 229.2 167 65.9
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 6.9e-55 219.5 583 27.3
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 2.0e-54 218.0 201 56.7
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 1.2e-51 208.8 420 33.8
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.7e-51 207.6 240 49.6
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.9e-50 203.8 240 48.8
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 8.5e-45 186.0 135 71.1
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 6.1e-35 153.3 132 59.8
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 2.6e-33 147.9 109 66.1
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.3e-33 147.5 98 70.4
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.3e-29 135.6 101 64.4
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 8.5e-29 132.9 105 61.0
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.4e-26 125.6 101 61.4
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 1.1e-23 115.9 231 35.5
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 9.1e-23 112.8 85 61.2
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 3.5e-22 110.9 87 59.8
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 7.7e-22 109.8 93 53.8
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 1.3e-21 109.0 145 43.4
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.1e-19 101.7 78 61.5
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 2.3e-18 98.2 69 65.2
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 2.3e-18 98.2 69 65.2
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 3.7e-16 90.9 69 62.3
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 9.1e-15 86.3 44 86.4
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 9.1e-15 86.3 44 86.4
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.2e-14 85.9 48 85.4
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 7.5e-09 66.6 53 58.5
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 1.3e-08 65.9 96 37.5
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 4.8e-08 63.9 382 19.1
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 6.3e-08 63.5 382 20.4
Ca_22573_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 8.3e-08 63.2 223 25.1
TPR.G34661 Trifolium pratense HOM05D000300 ORTHO05D008589 1.4e-07 62.4 223 24.7
Psat4g115000 Pisum sativum HOM05D000300 ORTHO05D008589 2.4e-07 61.6 223 25.1
Ca_21414_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 4.1e-07 60.8 223 25.1
Zm00001eb388530 Zea mays HOM05D022935 ORTHO05D020958 5.4e-07 60.5 113 30.1
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 9.1e-07 59.7 382 20.2
Phvul.003G063200 Phaseolus vulgaris HOM05D000300 ORTHO05D008589 9.1e-07 59.7 223 24.7
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 1.2e-06 59.3 382 20.4
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 2.7e-06 58.2 390 20.0
Peaxi162Scf00619g00118 Petunia axillaris HOM05D000300 ORTHO05D008589 2.7e-06 58.2 236 25.4
MD13G1097100 Malus domestica HOM05D000300 ORTHO05D008589 4.5e-06 57.4 223 24.2
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 5.9e-06 57.0 55 47.3
ATR1159G087 Amborella trichopoda HOM05D000855 ORTHO05D008530 7.7e-06 56.6 154 27.9
arahy.Tifrunner.gnm1.ann1.03BFRT Arachis hypogaea HOM05D000001 ORTHO05D000003 7.7e-06 56.6 136 25.7
MD16G1098000 Malus domestica HOM05D000300 ORTHO05D008589 7.7e-06 56.6 223 24.2
QL02p036317 Quercus lobata HOM05D000001 ORTHO05D000003 7.7e-06 56.6 165 29.1
Solyc11g006380.2 Solanum lycopersicum HOM05D000300 ORTHO05D008589 7.7e-06 56.6 176 27.3


User provided reference genes

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