Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 6.7e-119 431.4 218 100.0
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 1.9e-57 227.3 191 58.1
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 2.9e-53 213.4 177 60.5
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 1.6e-48 197.6 206 55.8
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 2.8e-40 170.2 192 49.0
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 6.2e-40 169.1 214 45.8
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 2.3e-39 167.2 211 47.4
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 2.6e-38 163.7 187 48.1
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 2.6e-38 163.7 187 48.1
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 5.8e-38 162.5 213 45.1
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 1.3e-37 161.4 197 44.7
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 3.7e-37 159.8 216 44.4
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 4.9e-37 159.5 209 43.5
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 6.4e-37 159.1 191 47.1
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 1.9e-36 157.5 187 48.7
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 2.4e-36 157.1 177 48.6
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 2.1e-35 154.1 186 47.3
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 2.1e-35 154.1 184 44.6
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 2.7e-35 153.7 198 44.4
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 3.9e-34 149.8 210 41.4
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 5.1e-34 149.4 200 45.0
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 5.1e-34 149.4 214 41.1
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 1.5e-33 147.9 184 47.8
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 1.5e-33 147.9 187 44.9
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 2.5e-33 147.1 214 41.6
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 5.6e-33 146.0 158 45.6
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 1.6e-32 144.4 199 44.2
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 2.8e-32 143.7 217 38.2
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 3.6e-32 143.3 168 47.0
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 5.2e-31 139.4 206 37.4
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 8.9e-31 138.7 206 42.2
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 2.6e-30 137.1 194 41.8
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 3.4e-30 136.7 200 41.5
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 1.7e-29 134.4 138 51.4
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 2.9e-29 133.7 181 42.5
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 6.4e-29 132.5 171 39.2
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 3.2e-28 130.2 172 40.7
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 3.2e-28 130.2 202 39.6
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 4.2e-28 129.8 172 41.3
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 4.2e-28 129.8 189 38.6
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 4.2e-28 129.8 187 39.6
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 1.6e-27 127.9 173 42.8
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 1.6e-27 127.9 193 39.4
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 3.5e-27 126.7 187 39.0
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 4.6e-27 126.3 187 38.5
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 2.3e-26 124.0 176 40.3
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 3.9e-26 123.2 186 38.2
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 3.9e-26 123.2 186 38.2
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 6.6e-26 122.5 159 42.1
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 1.9e-25 120.9 206 34.5
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 2.5e-25 120.6 185 41.1
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 3.3e-25 120.2 195 38.5
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 3.3e-25 120.2 171 38.6
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 7.3e-25 119.0 174 42.0
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 2.8e-24 117.1 156 37.8
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 1.8e-23 114.4 199 38.2
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 3.1e-23 113.6 164 39.0
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 2.0e-22 110.9 192 38.0
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 1.7e-21 107.8 198 36.9
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 2.2e-21 107.5 185 38.9
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 3.8e-21 106.7 171 37.4
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 2.7e-19 100.5 142 43.0
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 2.7e-19 100.5 144 42.4
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 2.3e-18 97.4 161 38.5
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 6.6e-18 95.9 214 35.0
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 1.5e-17 94.7 186 34.4
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 2.5e-17 94.0 190 35.3
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 2.5e-17 94.0 218 34.4
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 5.6e-17 92.8 140 41.4
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 7.3e-17 92.4 186 33.9
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 9.6e-17 92.0 181 35.9
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 1.3e-16 91.7 118 45.8
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 2.8e-16 90.5 180 30.0
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 2.4e-15 87.4 149 35.6
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 4.0e-15 86.7 157 37.6
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 9.0e-15 85.5 122 43.4
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 2.6e-14 84.0 140 38.6
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 2.6e-14 84.0 140 38.6
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 2.6e-14 84.0 192 30.2
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 3.4e-14 83.6 216 31.5
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 2.2e-13 80.9 141 37.6
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 2.2e-13 80.9 147 36.1
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 2.9e-13 80.5 98 40.8
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 1.4e-12 78.2 216 30.6
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 7.1e-12 75.9 156 31.4
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 7.1e-12 75.9 125 33.6
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 9.3e-12 75.5 159 31.4
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 6.0e-11 72.8 149 33.6
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 1.8e-10 71.2 128 38.3
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 3.9e-10 70.1 128 32.8
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 3.3e-09 67.0 116 31.0
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 2.8e-08 63.9 116 33.6
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 4.8e-08 63.2 192 30.7
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 1.8e-07 61.2 114 32.5
AUR62003098 Chenopodium quinoa HOM05D005706 ORTHO05D007474 5.3e-07 59.7 141 25.5
Nn2g14540 Nelumbo nucifera HOM05D007281 ORTHO05D009241 4.5e-06 56.6 77 32.5
AUR62007916 Chenopodium quinoa HOM05D005706 ORTHO05D007474 1.0e-05 55.5 141 24.8


User provided reference genes

Program Settings