Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 4.8e-88 327.8 164 100.0
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 7.0e-31 137.9 142 54.9
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 3.4e-25 119.0 145 51.0
Migut.H01328 Erythranthe guttata HOM05D005932 ORTHO05D006213 3.7e-24 115.5 145 51.7
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 5.4e-23 111.7 135 51.9
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 4.6e-22 108.6 131 48.9
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 1.1e-20 104.0 131 46.6
SalBow8G0055 Salvia bowleyana HOM05D005932 ORTHO05D006213 4.3e-20 102.1 125 46.4
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 1.2e-19 100.5 139 46.0
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 8.1e-19 97.8 131 44.3
Actinidia31387 Actinidia chinensis HOM05D005932 ORTHO05D006213 9.9e-17 90.9 155 42.6
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 2.2e-16 89.7 131 41.2
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 4.9e-16 88.6 125 42.4
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 6.4e-16 88.2 119 43.7
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 1.4e-15 87.0 130 40.8
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 2.4e-15 86.3 140 42.1
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 4.2e-15 85.5 143 40.6
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 9.2e-15 84.3 132 42.4
DCAR_003852 Daucus carota HOM05D005932 ORTHO05D006213 3.5e-14 82.4 121 43.0
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 3.5e-14 82.4 125 46.4
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 1.0e-13 80.9 119 47.9
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.7e-13 80.1 149 34.9
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 2.3e-13 79.7 140 37.9
Sopen02g006750 Solanum pennellii HOM05D005932 ORTHO05D006213 2.3e-13 79.7 130 40.8
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 3.0e-13 79.3 161 34.2
Peaxi162Scf00395g00004 Petunia axillaris HOM05D005932 ORTHO05D006213 3.9e-13 79.0 139 36.7
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 5.1e-13 78.6 140 37.1
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 6.6e-13 78.2 122 39.3
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 8.7e-13 77.8 125 36.8
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.1e-12 77.4 136 39.7
Dinv04757 Davidia involucrata HOM05D005932 ORTHO05D006213 1.9e-12 76.6 103 45.6
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 2.5e-12 76.3 137 38.0
Actinidia32363 Actinidia chinensis HOM05D005932 ORTHO05D006213 3.3e-12 75.9 114 39.5
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 3.3e-12 75.9 130 38.5
Nitab4.5_0004615g0090 Nicotiana tabacum HOM05D005932 ORTHO05D006213 3.3e-12 75.9 111 40.5
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 3.3e-12 75.9 141 36.9
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 4.3e-12 75.5 154 35.1
Lsat_1_v5_gn_2_93200 Lactuca sativa HOM05D005932 ORTHO05D006213 4.3e-12 75.5 105 43.8
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 4.3e-12 75.5 128 39.8
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 5.6e-12 75.1 123 35.8
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 7.3e-12 74.7 123 42.3
Lj1P1161T30 Lonicera japonica HOM05D005932 ORTHO05D006213 9.6e-12 74.3 111 44.1
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 1.2e-11 73.9 128 37.5
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 1.2e-11 73.9 140 37.1
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 1.6e-11 73.6 114 38.6
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 2.1e-11 73.2 120 37.5
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 2.1e-11 73.2 133 39.8
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 3.6e-11 72.4 141 35.5
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 3.6e-11 72.4 111 39.6
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.1e-10 70.9 129 41.1
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 1.1e-10 70.9 149 34.9
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 1.4e-10 70.5 116 42.2
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 3.1e-10 69.3 111 36.0
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 3.1e-10 69.3 111 36.0
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 3.1e-10 69.3 111 36.0
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 4.0e-10 68.9 112 38.4
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 5.2e-10 68.6 130 36.2
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 5.2e-10 68.6 121 36.4
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 5.2e-10 68.6 138 41.3
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 5.2e-10 68.6 130 40.8
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 6.9e-10 68.2 138 34.8
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 6.9e-10 68.2 114 37.7
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 9.0e-10 67.8 113 36.3
Lj2P330T27 Lonicera japonica HOM05D005932 ORTHO05D006213 1.2e-09 67.4 130 36.9
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 1.2e-09 67.4 130 39.2
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 1.5e-09 67.0 112 36.6
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 2.0e-09 66.6 119 37.8
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 4.4e-09 65.5 123 37.4
MBI18_g11291_MAGBIO Magnolia biondii HOM05D005932 ORTHO05D006213 4.4e-09 65.5 112 39.3
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 5.8e-09 65.1 129 38.0
CsaV3_6G052360 Cucumis sativus L. HOM05D005932 ORTHO05D006213 9.9e-09 64.3 117 35.9
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 1.7e-08 63.5 113 35.4
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 1.7e-08 63.5 119 37.0
Phvul.006G128300 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 1.7e-08 63.5 120 36.7
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 2.9e-08 62.8 125 34.4
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 3.8e-08 62.4 131 34.4
ECA238G1329 Erigeron canadensis HOM05D005932 ORTHO05D006213 1.1e-07 60.8 127 35.4
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 1.1e-07 60.8 112 37.5
PGR083G0615 Punica granatum HOM05D005932 ORTHO05D006213 1.1e-07 60.8 141 29.8
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 1.4e-07 60.5 119 39.5
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 1.4e-07 60.5 131 35.9
AL7G32200 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 4.2e-07 58.9 135 32.6
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 5.4e-07 58.5 142 33.1
RcHm_v2.0_Chr5g0016051 Rosa chinensis HOM05D005932 ORTHO05D006213 7.1e-07 58.2 135 31.1
AT4G21740 Arabidopsis thaliana HOM05D005932 ORTHO05D006213 2.1e-06 56.6 135 31.9
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 2.7e-06 56.2 136 31.6
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 3.5e-06 55.8 118 32.2
Lj6g0008899 Lotus japonicus HOM05D005932 ORTHO05D006213 6.0e-06 55.1 117 32.5
FAN16G0402 Fragaria x ananassa HOM05D005932 ORTHO05D006213 7.8e-06 54.7 125 33.6


User provided reference genes

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