Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 2.4e-152 542.3 320 100.0
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 1.6e-87 327.0 334 58.7
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.3e-73 280.8 331 51.7
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 5.0e-73 278.9 331 52.9
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.1e-72 277.7 324 52.5
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.1e-72 277.7 324 52.5
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.5e-72 276.6 324 52.5
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 9.4e-72 274.6 330 51.5
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 4.7e-71 272.3 323 52.3
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.0e-70 269.6 333 50.8
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 4.0e-70 269.2 327 48.9
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.0e-70 269.2 342 49.1
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.0e-70 269.2 342 49.1
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.2e-69 267.7 333 50.5
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 3.3e-69 266.2 329 51.1
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 1.3e-68 264.2 330 50.0
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.2e-68 263.5 331 49.2
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 4.8e-68 262.3 345 53.3
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 2.4e-67 260.0 331 50.5
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 3.6e-63 246.1 332 50.3
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 1.5e-61 240.7 330 47.3
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 3.7e-60 236.1 317 49.5
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 1.4e-59 234.2 326 47.9
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 5.4e-59 232.3 331 45.3
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 3.5e-58 229.6 322 46.6
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 2.3e-57 226.9 329 45.3
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 2.9e-57 226.5 296 48.3
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 7.2e-56 221.9 316 46.2
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.2e-55 221.1 334 46.7
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 4.0e-54 216.1 330 45.2
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.0e-54 216.1 309 46.9
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 5.2e-54 215.7 297 47.5
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 6.8e-54 215.3 334 45.5
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 1.2e-53 214.5 326 44.5
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 2.6e-53 213.4 297 46.5
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 3.4e-53 213.0 297 47.5
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 3.4e-53 213.0 303 46.5
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.7e-52 210.7 323 45.5
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 4.9e-52 209.1 323 45.2
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.9e-52 209.1 323 45.2
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 1.4e-51 207.6 328 43.9
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 3.1e-51 206.5 320 44.4
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 5.4e-51 205.7 321 43.9
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.6e-50 204.1 313 45.7
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.0e-50 203.8 289 46.0
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 2.7e-50 203.4 242 52.9
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.7e-50 203.4 323 43.3
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 3.5e-50 203.0 248 53.6
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 4.5e-50 202.6 308 45.8
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 5.9e-50 202.2 319 43.3
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 2.3e-49 200.3 318 43.1
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 1.6e-47 194.1 311 42.8
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 2.8e-47 193.4 303 45.2
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 3.6e-47 193.0 330 43.3
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 1.0e-46 191.4 311 44.1
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 4.4e-45 186.0 310 42.3
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 1.7e-44 184.1 262 45.8
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 2.2e-44 183.7 286 43.7
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.4e-43 181.0 254 48.8
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 2.4e-43 180.3 308 41.6
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 7.0e-43 178.7 344 40.7
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 9.2e-43 178.3 254 48.0
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.6e-42 177.6 254 48.0
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 3.5e-42 176.4 320 41.6
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 3.5e-42 176.4 320 40.3
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 4.6e-42 176.0 307 40.4
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 4.6e-42 176.0 314 42.0
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 7.8e-42 175.3 236 48.3
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 8.6e-41 171.8 306 41.2
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.5e-40 171.0 302 40.7
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 2.5e-40 170.2 317 40.4
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 2.5e-40 170.2 258 45.0
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 4.3e-40 169.5 317 40.7
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 1.6e-39 167.5 317 39.7
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 2.1e-39 167.2 300 40.3
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 2.1e-39 167.2 240 47.1
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 4.7e-39 166.0 301 40.2
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 8.0e-39 165.2 303 38.9
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 1.4e-38 164.5 302 40.7
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.8e-38 164.1 289 40.8
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 2.3e-38 163.7 314 38.9
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 4.0e-38 162.9 253 43.9
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 4.0e-38 162.9 287 41.8
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 5.2e-38 162.5 305 39.0
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 6.8e-38 162.2 247 46.6
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 2.0e-37 160.6 258 45.3
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 2.6e-37 160.2 286 40.9
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 2.6e-37 160.2 291 40.2
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 3.4e-37 159.8 315 38.4
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 5.8e-37 159.1 286 40.6
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 5.8e-37 159.1 313 37.4
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 7.5e-37 158.7 286 40.6
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 1.7e-36 157.5 286 40.2
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 1.7e-36 157.5 286 40.2
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 1.7e-36 157.5 286 40.2
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 2.9e-36 156.8 314 37.3
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 3.7e-36 156.4 309 39.8
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 4.9e-36 156.0 307 38.1
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 6.4e-36 155.6 226 45.1
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 6.4e-36 155.6 317 39.4
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 6.4e-36 155.6 322 36.0
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 8.3e-36 155.2 307 37.1
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.1e-35 154.8 226 45.1
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.1e-35 154.8 285 41.1
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.1e-35 154.8 308 39.0
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 4.1e-35 152.9 314 37.6
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 5.4e-35 152.5 309 35.6
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 1.2e-34 151.4 308 37.0
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 1.2e-34 151.4 312 37.2
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 1.6e-34 151.0 202 50.5
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 2.0e-34 150.6 307 36.8
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 3.5e-34 149.8 288 36.8
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 4.6e-34 149.4 302 37.4
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 4.3e-32 142.9 272 39.0
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 8.1e-31 138.7 228 43.0
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 8.3e-28 128.6 141 56.7
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.7e-25 120.9 268 35.4
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 2.3e-25 120.6 268 35.4
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 3.0e-25 120.2 228 41.2
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.6e-23 114.4 289 33.2
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.1e-23 114.0 289 33.9
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 4.4e-21 106.3 101 59.4
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 4.9e-20 102.8 179 42.5
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 1.6e-18 97.8 275 34.5
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 2.7e-18 97.1 79 67.1
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 8.1e-15 85.5 166 37.3
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 6.6e-09 65.9 90 46.7


User provided reference genes

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