Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 4.5e-193 677.9 391 100.0
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 4.6e-97 359.0 393 55.5
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 4.5e-68 262.7 403 49.9
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 7.7e-68 261.9 406 48.0
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 2.8e-62 243.4 398 47.5
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 1.0e-51 208.4 407 40.3
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 1.5e-50 204.5 307 45.9
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 9.5e-50 201.8 435 38.6
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 1.4e-48 198.0 388 39.4
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 9.8e-47 191.8 398 36.9
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 1.3e-46 191.4 438 37.7
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 1.7e-46 191.0 348 40.5
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 5.4e-45 186.0 405 43.7
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 7.0e-45 185.7 312 42.3
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 1.9e-42 177.6 424 35.6
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 7.3e-42 175.6 396 36.4
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 1.2e-41 174.9 375 36.8
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 2.8e-41 173.7 385 34.3
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 6.2e-41 172.6 423 35.7
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 1.8e-40 171.0 400 37.0
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 1.8e-40 171.0 423 35.7
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 6.8e-40 169.1 361 38.0
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 8.9e-40 168.7 350 38.6
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 1.2e-39 168.3 280 40.4
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 1.3e-38 164.9 277 44.4
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 3.7e-38 163.3 368 35.3
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 8.3e-38 162.2 407 35.4
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 5.4e-37 159.5 466 32.0
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 9.2e-37 158.7 354 32.5
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 2.0e-36 157.5 296 40.2
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 2.7e-36 157.1 343 34.7
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 7.8e-36 155.6 391 35.5
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 3.0e-35 153.7 417 33.1
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 5.0e-35 152.9 344 36.3
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.5e-34 151.4 401 34.9
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 2.5e-34 150.6 398 34.7
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 3.3e-34 150.2 397 34.5
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 5.6e-34 149.4 275 36.7
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 1.6e-33 147.9 393 33.1
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 1.6e-33 147.9 412 33.5
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 2.8e-33 147.1 401 32.7
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 6.2e-33 146.0 277 40.1
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 6.2e-33 146.0 403 32.5
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 1.1e-32 145.2 411 32.4
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 2.3e-32 144.1 385 35.1
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 2.3e-32 144.1 410 34.6
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 3.1e-32 143.7 413 30.8
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.2e-31 141.7 398 33.7
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 1.2e-31 141.7 353 33.4
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 1.5e-31 141.4 382 32.5
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 1.5e-31 141.4 396 33.1
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 3.4e-31 140.2 389 35.7
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 5.8e-31 139.4 384 33.1
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 5.8e-31 139.4 381 34.9
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 5.8e-31 139.4 398 33.9
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 5.8e-31 139.4 411 34.8
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 7.5e-31 139.0 383 35.5
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 7.5e-31 139.0 383 35.5
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 7.5e-31 139.0 312 36.5
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 1.7e-30 137.9 393 31.0
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 2.9e-30 137.1 398 33.2
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 4.9e-30 136.3 401 30.4
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 8.3e-30 135.6 246 39.4
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 1.4e-29 134.8 280 35.0
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 1.9e-29 134.4 381 35.4
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 9.2e-29 132.1 352 31.2
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 1.2e-28 131.7 377 33.7
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 1.6e-28 131.3 388 34.0
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 1.6e-28 131.3 347 32.6
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 2.7e-28 130.6 408 31.1
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 3.5e-28 130.2 387 30.0
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 3.5e-28 130.2 273 35.9
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 3.5e-28 130.2 288 34.7
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 6.0e-28 129.4 385 29.4
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 7.8e-28 129.0 396 31.1
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 7.8e-28 129.0 356 31.5
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 1.0e-27 128.6 392 33.2
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 2.3e-27 127.5 253 37.9
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 2.3e-27 127.5 136 48.5
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 5.1e-27 126.3 398 29.9
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 5.1e-27 126.3 399 31.1
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 5.1e-27 126.3 408 30.4
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 5.1e-27 126.3 343 32.9
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 1.1e-26 125.2 397 29.7
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 1.5e-26 124.8 279 37.6
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 2.5e-26 124.0 178 38.2
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 5.6e-26 122.9 404 34.2
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 6.2e-25 119.4 301 33.9
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.8e-24 117.9 379 28.8
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 5.2e-24 116.3 364 34.3
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 6.8e-24 115.9 124 49.2
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 2.2e-22 110.9 335 31.9
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 6.4e-22 109.4 102 57.8
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 8.4e-22 109.0 114 50.0
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 8.4e-22 109.0 114 49.1
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 1.4e-21 108.2 98 56.1
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 1.4e-21 108.2 98 56.1
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 3.2e-21 107.1 267 32.2
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 2.7e-20 104.0 114 47.4
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 3.5e-20 103.6 351 31.3
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 4.6e-20 103.2 99 53.5
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 1.7e-19 101.3 395 30.1
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 1.1e-18 98.6 197 36.0
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 1.9e-18 97.8 387 28.9
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 1.9e-18 97.8 88 54.5
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 3.3e-18 97.1 202 34.7
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 1.2e-17 95.1 259 33.2
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 1.2e-17 95.1 254 33.9
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 2.8e-17 94.0 227 33.5
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 3.1e-16 90.5 390 28.7
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 6.9e-16 89.4 395 28.9
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 3.8e-14 83.6 288 28.5
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 2.4e-13 80.9 97 50.5
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 7.1e-13 79.3 157 35.7
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 1.2e-12 78.6 71 53.5
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 8.7e-11 72.4 57 57.9
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 2.8e-09 67.4 44 68.2
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 1.4e-08 65.1 71 46.5
Pp3c14_16980 Physcomitrium patens HOM05D029403 ORTHO05D006930 2.4e-08 64.3 63 47.6
SMO356G0556 Selaginella moellendorffii HOM05D005773 ORTHO05D006930 3.1e-08 63.9 80 37.5
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 6.9e-08 62.8 59 47.5
Atru.chr9.2474 Acer truncatum HOM05D000366 ORTHO05D001950 3.4e-07 60.5 56 48.2
Pp3c17_20330 Physcomitrium patens HOM05D029403 ORTHO05D006930 3.4e-07 60.5 164 32.9
Mapoly0035s0141 Marchantia polymorpha HOM05D005773 ORTHO05D006930 2.9e-06 57.4 63 38.1


User provided reference genes

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