Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 2.1e-186 655.6 346 100.0
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 2.4e-97 359.8 356 61.5
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.7e-85 318.9 353 57.5
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 3.3e-78 296.2 346 55.2
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.3e-71 274.2 352 52.6
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.6e-70 268.9 387 48.8
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 2.1e-69 266.9 371 48.5
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.8e-68 263.8 319 53.6
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 3.4e-67 259.6 329 51.7
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 9.9e-67 258.1 364 50.3
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 9.9e-67 258.1 388 46.6
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 1.1e-65 254.6 345 48.7
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.4e-65 253.4 344 50.3
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 4.1e-65 252.7 362 47.8
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 5.1e-63 245.7 348 48.0
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.6e-63 245.4 345 50.4
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.5e-62 244.2 352 47.7
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 4.3e-62 242.7 360 46.4
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.7e-61 239.2 348 48.3
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.7e-61 239.2 351 46.2
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 4.0e-60 236.1 321 48.3
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 8.9e-60 235.0 361 47.1
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.2e-59 234.6 354 45.5
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 4.4e-59 232.6 361 46.5
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 1.3e-58 231.1 379 45.6
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 6.4e-58 228.8 355 45.9
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.4e-57 227.6 353 46.2
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-57 227.6 372 46.2
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 3.2e-57 226.5 319 48.0
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 3.2e-57 226.5 367 45.8
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 5.4e-57 225.7 367 44.1
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.2e-56 224.6 362 44.5
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.2e-56 224.6 317 46.1
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 2.7e-56 223.4 341 46.0
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 3.5e-56 223.0 346 43.9
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 4.6e-56 222.6 340 46.5
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 7.8e-56 221.9 333 45.9
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 1.0e-55 221.5 369 45.0
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.3e-55 220.3 356 44.1
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 5.1e-55 219.2 361 44.3
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 6.6e-55 218.8 357 44.8
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 8.7e-55 218.4 369 44.7
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 1.1e-54 218.0 357 44.8
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 1.9e-54 217.2 362 42.8
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 2.5e-54 216.9 329 45.0
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.5e-54 216.9 353 44.2
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 5.6e-54 215.7 332 44.9
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 5.6e-54 215.7 318 45.9
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 9.6e-54 214.9 373 44.0
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 1.2e-53 214.5 321 47.4
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.2e-53 214.5 360 44.7
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.1e-53 213.8 303 48.5
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 8.1e-53 211.8 353 43.9
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 8.1e-53 211.8 349 42.7
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 8.1e-53 211.8 356 45.8
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 1.1e-52 211.5 361 44.3
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 1.1e-52 211.5 366 43.7
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 1.1e-52 211.5 360 44.4
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 1.8e-52 210.7 327 45.0
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 2.4e-52 210.3 366 43.7
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 2.4e-52 210.3 326 43.6
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 5.3e-52 209.1 393 41.2
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 9.0e-52 208.4 361 43.5
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 9.0e-52 208.4 361 43.5
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 9.0e-52 208.4 361 43.5
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.5e-51 207.6 355 42.8
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 1.5e-51 207.6 393 41.2
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 2.0e-51 207.2 380 41.8
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.0e-51 207.2 325 47.4
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.4e-51 206.5 363 42.4
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 6.4e-50 202.2 352 42.3
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 6.4e-50 202.2 348 43.4
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 1.1e-49 201.4 353 45.0
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.4e-49 201.1 356 43.0
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-49 201.1 363 43.8
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.9e-49 200.7 338 42.9
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 2.4e-49 200.3 349 42.1
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 5.4e-49 199.1 397 39.5
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 5.4e-49 199.1 351 44.4
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 9.3e-49 198.4 360 41.4
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 1.2e-48 198.0 341 43.7
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 1.6e-48 197.6 361 43.8
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.1e-48 197.2 341 42.5
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 3.5e-48 196.4 353 44.5
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 4.6e-48 196.1 350 43.4
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 6.0e-48 195.7 352 44.0
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 6.0e-48 195.7 365 40.8
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.7e-47 194.1 336 43.5
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 3.0e-47 193.4 361 41.0
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 1.5e-46 191.0 359 41.5
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.5e-46 191.0 239 50.6
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 1.9e-46 190.7 362 41.7
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.9e-46 190.7 320 42.2
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 5.6e-46 189.1 369 42.3
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 7.3e-46 188.7 348 40.8
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 1.6e-45 187.6 402 38.3
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.1e-45 187.2 373 42.1
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 8.1e-45 185.3 318 44.7
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 8.1e-45 185.3 359 40.4
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 8.1e-45 185.3 354 41.0
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.1e-44 184.9 358 40.8
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.1e-44 184.9 372 41.4
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 1.8e-44 184.1 349 40.4
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 9.0e-44 181.8 352 39.8
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.5e-43 181.0 343 42.3
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 3.4e-43 179.9 317 42.0
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 4.5e-43 179.5 309 44.3
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.5e-43 179.5 341 43.7
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 4.5e-43 179.5 331 42.9
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.7e-42 177.6 318 43.1
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 2.2e-42 177.2 322 40.1
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 1.4e-41 174.5 344 38.7
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 7.1e-41 172.2 360 38.1
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 9.3e-41 171.8 300 43.7
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 9.3e-41 171.8 299 41.8
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 4.6e-40 169.5 319 39.5
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 2.3e-39 167.2 286 41.6
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 5.1e-39 166.0 358 39.1
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 1.1e-38 164.9 359 39.8
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.5e-38 164.5 315 40.6
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.6e-37 161.0 321 39.9
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.1e-37 160.6 321 39.9
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 2.1e-37 160.6 312 42.9
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 3.7e-37 159.8 336 39.9
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 4.8e-37 159.5 318 41.2
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 9.0e-36 155.2 358 37.7
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 7.6e-35 152.1 341 37.8
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.7e-34 151.0 263 43.7
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.9e-34 150.2 368 37.2
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 6.4e-34 149.1 159 57.2
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 4.6e-32 142.9 296 39.5
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 6.0e-32 142.5 332 35.8
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.8e-31 141.0 242 45.0
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.9e-31 139.8 366 37.2
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 6.7e-31 139.0 290 38.3
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.9e-30 137.5 367 37.3
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 2.1e-29 134.0 367 34.3
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.4e-28 131.3 156 53.2
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.9e-28 129.0 270 39.6
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.3e-26 124.8 190 45.8
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-25 121.3 280 36.8
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 7.1e-25 119.0 261 36.0
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 3.0e-23 113.6 165 49.1
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 3.0e-23 113.6 325 31.7
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 2.8e-21 107.1 150 50.7
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 5.3e-20 102.8 214 38.8
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 9.0e-20 102.1 317 34.4
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 1.7e-18 97.8 229 36.2
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.8e-18 96.7 311 33.8
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 1.6e-16 91.3 357 30.8
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.6e-16 90.1 150 44.7
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 7.9e-16 89.0 182 37.9
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 3.3e-14 83.6 353 29.5
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 2.6e-11 73.9 194 34.5
Oeu049699.1 Olea europaea HOM05D004496 ORTHO05D005513 1.7e-10 71.2 61 60.7
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 2.7e-08 63.9 183 38.8
Os01g0922100 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 1.0e-07 62.0 170 34.1
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.7e-07 59.3 137 38.0
Zm00001eb143140 Zea mays HOM05D004496 ORTHO05D005513 1.5e-06 58.2 69 49.3


User provided reference genes

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