Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 2.1e-87 325.9 191 100.0
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 2.0e-45 186.4 149 79.9
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.7e-44 183.3 161 75.2
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.9e-40 169.9 146 76.0
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 2.5e-40 169.5 150 74.0
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.6e-39 166.8 153 72.5
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 6.3e-39 164.9 143 74.8
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 2.4e-38 162.9 160 68.8
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 5.0e-36 155.2 150 67.3
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 8.5e-36 154.5 153 64.7
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 8.5e-36 154.5 154 66.9
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 2.5e-35 152.9 194 58.8
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 3.2e-35 152.5 154 67.5
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.2e-34 150.6 154 66.9
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.7e-34 149.4 144 71.5
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.7e-34 149.4 120 83.3
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 4.6e-34 148.7 155 65.8
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 4.6e-34 148.7 186 61.3
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.1e-34 148.3 151 64.2
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 3.0e-33 146.0 111 86.5
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 3.9e-33 145.6 154 65.6
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 1.1e-32 144.1 157 66.2
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 4.4e-32 142.1 109 84.4
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 7.4e-32 141.4 150 66.7
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 8.2e-31 137.9 120 76.7
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 2.4e-30 136.3 109 81.7
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.4e-30 136.3 154 63.0
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 9.1e-30 134.4 154 62.3
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 9.1e-30 134.4 112 78.6
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 3.8e-28 129.0 154 63.6
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.1e-27 127.5 125 72.8
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.9e-27 126.7 117 78.6
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.5e-27 126.3 128 70.3
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 2.5e-27 126.3 146 62.3
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.2e-26 124.0 165 58.2
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 2.7e-26 122.9 145 62.8
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 6.1e-26 121.7 125 68.8
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 6.1e-26 121.7 100 82.0
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 6.1e-26 121.7 97 85.6
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 7.9e-26 121.3 121 70.2
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 1.4e-25 120.6 100 84.0
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 1.4e-25 120.6 102 80.4
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.9e-25 119.0 102 79.4
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.9e-25 119.0 102 79.4
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.9e-25 119.0 102 79.4
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 3.9e-25 119.0 164 56.7
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 3.9e-25 119.0 146 61.6
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 5.2e-25 118.6 100 82.0
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 5.2e-25 118.6 180 55.6
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 6.7e-25 118.2 111 74.8
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 8.8e-25 117.9 97 83.5
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 2.0e-24 116.7 155 58.7
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 2.6e-24 116.3 100 81.0
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.6e-24 116.3 101 78.2
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 4.4e-24 115.5 111 76.6
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 7.4e-24 114.8 110 65.5
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 2.2e-23 113.2 155 57.4
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 2.2e-23 113.2 143 55.2
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 2.8e-23 112.8 100 77.0
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.8e-23 112.8 106 78.3
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 4.8e-23 112.1 141 61.7
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 6.3e-23 111.7 141 62.4
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 8.2e-23 111.3 104 76.0
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 8.2e-23 111.3 104 71.2
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.4e-22 110.5 102 75.5
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 9.1e-22 107.8 100 79.0
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.2e-21 107.5 141 61.0
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.2e-21 107.5 128 60.2
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.6e-21 107.1 137 56.2
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 7.7e-21 104.8 106 72.6
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 7.7e-21 104.8 105 78.1
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 7.7e-21 104.8 123 62.6
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 7.7e-21 104.8 125 60.8
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.3e-20 104.0 88 79.5
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.7e-20 103.6 102 72.5
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 2.2e-20 103.2 102 72.5
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 2.2e-20 103.2 102 72.5
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 2.9e-20 102.8 137 62.0
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 3.8e-20 102.4 148 49.3
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.8e-20 102.4 124 61.3
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.0e-20 102.1 162 51.9
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 6.5e-20 101.7 102 73.5
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 2.5e-19 99.8 159 56.6
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 4.2e-19 99.0 104 73.1
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 4.2e-19 99.0 104 73.1
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.5e-19 98.6 103 64.1
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.5e-19 98.6 103 64.1
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.5e-19 98.6 173 50.9
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 7.2e-19 98.2 120 64.2
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 7.2e-19 98.2 104 73.1
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 7.2e-19 98.2 104 71.2
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 7.2e-19 98.2 106 64.2
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 9.4e-19 97.8 103 74.8
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 9.4e-19 97.8 62 82.3
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 1.2e-18 97.4 104 73.1
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.2e-18 97.4 103 64.1
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 2.1e-18 96.7 104 72.1
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 2.7e-18 96.3 103 63.1
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 8.0e-18 94.7 139 56.8
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.4e-17 94.0 102 70.6
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.8e-17 93.6 137 54.7
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.0e-17 92.4 103 62.1
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 5.2e-17 92.0 160 51.9
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 8.8e-17 91.3 123 57.7
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 2.6e-16 89.7 157 47.1
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 4.4e-16 89.0 119 54.6
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 4.4e-16 89.0 119 54.6
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 4.4e-16 89.0 101 59.4
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 5.7e-16 88.6 109 58.7
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 7.5e-16 88.2 101 59.4
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 1.7e-15 87.0 101 59.4
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 2.8e-15 86.3 102 63.7
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 4.8e-15 85.5 101 71.3
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 6.3e-15 85.1 106 64.2
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 8.2e-15 84.7 157 49.0
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 8.2e-15 84.7 102 57.8
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 8.2e-15 84.7 92 62.0
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.4e-14 83.2 119 58.0
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 5.3e-14 82.0 91 61.5
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 5.3e-14 82.0 91 61.5
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 7.0e-14 81.6 100 61.0
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 7.0e-14 81.6 119 56.3
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 9.1e-14 81.3 100 64.0
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.2e-13 80.9 92 68.5
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 2.0e-13 80.1 93 61.3
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 2.0e-13 80.1 93 61.3
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 2.0e-13 80.1 115 58.3
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.0e-13 80.1 101 62.4
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 2.7e-13 79.7 104 56.7
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 1.7e-12 77.0 125 52.8
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.8e-12 75.9 128 51.6
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 6.5e-12 75.1 90 61.1
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 1.5e-11 73.9 129 48.1
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.2e-11 72.8 80 66.2
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 7.2e-11 71.6 68 70.6
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.6e-10 70.5 68 73.5
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.6e-10 70.5 72 66.7
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 8.0e-10 68.2 103 59.2
Nitab4.5_0010352g0020 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.4e-09 67.4 176 42.0
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.3e-09 66.6 104 58.7
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 4.0e-09 65.9 85 49.4
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.0e-08 63.5 68 60.3
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.6e-08 63.2 68 66.2
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 5.7e-08 62.0 104 57.7
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 7.5e-08 61.6 110 48.2
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 9.8e-08 61.2 122 44.3
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 1.7e-07 60.5 108 50.9
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 2.2e-07 60.1 134 43.3
AagrBONN_evm.TU.Sc2ySwM_228.3972 Anthoceros agrestis HOM05D004577 ORTHO05D005062 3.7e-07 59.3 100 52.0
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 3.7e-07 59.3 125 44.8
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 4.8e-07 58.9 97 51.5
TPR.G38738 Trifolium pratense HOM05D011393 ORTHO05D013493 3.1e-06 56.2 117 44.4
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 4.1e-06 55.8 51 62.7


User provided reference genes

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