Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 7.9e-299 1029.6 507 100.0
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.1e-228 796.6 543 72.6
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 2.5e-228 795.4 543 72.4
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 2.1e-227 792.3 509 75.0
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.4e-223 778.9 512 74.6
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.7e-221 772.7 525 71.0
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.2e-219 766.5 517 71.2
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.6e-219 766.1 519 71.3
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 4.7e-219 764.6 515 72.6
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 4.7e-219 764.6 530 70.0
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.4e-218 763.1 526 70.2
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.4e-218 763.1 526 70.9
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.8e-218 762.7 528 69.9
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 7.6e-217 757.3 523 68.8
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-215 753.4 515 70.5
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-215 753.4 515 70.5
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-215 751.9 515 70.3
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-215 751.9 515 70.3
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 3.4e-209 731.9 521 68.1
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 3.4e-209 731.9 523 67.9
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.2e-208 729.2 513 70.6
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 2.2e-208 729.2 518 68.7
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.1e-207 726.9 512 68.6
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 2.4e-207 725.7 507 69.2
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.4e-207 724.5 515 70.3
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.8e-205 719.5 515 69.9
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 5.1e-205 718.0 518 67.8
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 6.7e-205 717.6 519 67.1
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.1e-204 716.8 519 68.0
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 2.5e-204 715.7 507 68.2
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.8e-203 712.2 516 68.0
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.8e-203 711.4 520 67.9
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.1e-202 710.3 519 68.2
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 3.1e-202 708.8 507 67.5
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.1e-202 708.8 512 67.4
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.2e-201 706.8 507 68.2
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.2e-201 706.8 518 65.4
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.5e-201 706.4 511 66.1
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.6e-201 705.7 525 65.5
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.6e-201 705.7 525 65.5
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 4.5e-201 704.9 513 67.1
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 5.8e-201 704.5 512 66.0
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 7.6e-201 704.1 520 65.0
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.2e-200 702.6 513 66.9
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 2.5e-199 699.1 497 68.0
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 9.3e-199 697.2 514 66.3
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.2e-198 696.8 520 65.8
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 4.6e-198 694.9 522 66.1
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 7.9e-198 694.1 518 67.8
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.3e-197 693.3 520 65.4
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 2.3e-197 692.6 523 65.0
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.5e-196 689.9 526 65.2
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.1e-195 686.0 506 66.6
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 3.7e-195 685.3 532 62.6
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 6.2e-195 684.5 521 65.5
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.8e-194 682.9 515 67.8
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.5e-193 679.9 515 63.9
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.6e-193 679.1 538 62.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 3.8e-192 675.2 516 65.1
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 8.4e-192 674.1 505 64.6
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.1e-191 673.7 510 63.9
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.9e-191 672.9 520 63.3
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.2e-190 670.2 522 63.2
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 2.1e-190 669.5 527 63.6
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 3.5e-190 668.7 513 63.9
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 1.8e-189 666.4 511 63.4
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.8e-189 666.4 515 63.1
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.9e-189 665.2 521 63.5
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 8.7e-189 664.1 535 62.4
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 8.7e-189 664.1 510 63.7
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.5e-188 663.3 539 61.0
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.5e-188 662.5 521 63.3
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.3e-188 661.8 522 62.8
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 5.7e-188 661.4 516 63.6
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 7.4e-188 661.0 520 63.3
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 9.7e-188 660.6 539 61.2
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 2.8e-187 659.1 535 61.3
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 3.7e-187 658.7 509 63.1
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 4.8e-187 658.3 536 61.2
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.4e-186 656.8 531 60.8
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.8e-186 656.4 530 61.3
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.8e-186 656.4 519 63.6
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 2.4e-186 656.0 523 62.3
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 2.4e-186 656.0 457 70.0
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 3.1e-186 655.6 545 59.6
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.2e-185 653.7 529 60.7
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.5e-185 653.3 533 61.0
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 3.4e-185 652.1 537 60.7
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.7e-184 649.8 527 62.0
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 6.5e-184 647.9 516 60.5
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 5.5e-183 644.8 519 60.1
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 6.1e-182 641.3 551 59.9
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 5.3e-178 628.2 522 60.0
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.9e-176 622.5 510 60.4
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 8.5e-176 620.9 518 61.8
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 5.5e-175 618.2 514 59.1
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.2e-174 617.1 523 57.7
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 4.7e-174 615.1 502 58.4
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.0e-173 614.0 488 59.0
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.4e-173 613.6 518 57.9
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.4e-173 613.6 411 70.1
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.8e-173 613.2 529 58.8
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.2e-171 606.3 536 56.2
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.4e-170 603.6 455 63.1
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.4e-170 602.8 456 61.0
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 3.5e-169 599.0 455 63.7
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 3.0e-165 585.9 447 60.9
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 9.7e-164 580.9 393 68.7
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 2.8e-163 579.3 446 64.1
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 9.1e-162 574.3 480 60.0
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 7.7e-153 544.7 311 80.4
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 9.4e-151 537.7 448 59.2
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.1e-150 536.6 382 64.4
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 3.1e-146 522.7 453 56.3
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 7.0e-146 521.5 311 76.5
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.2e-140 504.2 291 78.0
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.7e-136 490.3 303 74.9
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.0e-132 476.9 311 69.1
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 4.9e-123 445.7 507 44.0
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.9e-122 443.7 292 67.1
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 9.2e-122 441.4 382 55.8
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 3.3e-119 433.0 241 83.0
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 4.6e-113 412.5 246 77.2
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 3.0e-112 409.8 571 39.2
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 3.6e-110 402.9 504 42.3
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 3.1e-109 399.8 238 77.3
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 9.9e-92 341.7 399 48.4
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 2.1e-86 323.9 198 75.3
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.2e-84 318.2 339 50.7
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.0e-80 305.1 201 70.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 9.6e-79 298.5 314 48.4
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.4e-77 294.7 213 66.2
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 4.2e-74 283.1 271 56.1
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 2.5e-71 273.9 166 75.3
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 2.6e-55 220.7 156 67.9
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 3.3e-55 220.3 249 50.6
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.7e-54 218.0 249 50.2
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.4e-53 214.9 157 66.2
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 3.8e-51 206.8 213 52.1
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-49 201.8 140 65.0
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.2e-49 201.8 140 65.0
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 3.6e-49 200.3 126 69.8
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 8.8e-48 195.7 202 47.0
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-47 194.9 444 29.3
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.9e-44 183.0 108 77.8
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 4.1e-37 160.2 106 64.2
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 4.1e-37 160.2 166 50.0
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.5e-34 151.0 98 73.5
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 3.2e-34 150.6 264 39.0
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 4.2e-34 150.2 259 36.7
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 5.5e-34 149.8 165 50.3
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 9.4e-34 149.1 223 39.5
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 2.6e-31 141.0 264 36.0
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 4.1e-29 133.7 169 47.3
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 3.8e-27 127.1 79 68.4
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 3.8e-27 127.1 79 68.4
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 6.6e-27 126.3 106 60.4
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 3.6e-25 120.6 85 62.4
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.3e-24 117.9 95 60.0
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.7e-19 101.7 72 69.4
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.6e-15 87.8 59 64.4
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 6.4e-14 83.2 90 48.9
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 3.4e-07 60.8 163 28.2
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.3e-06 58.9 34 82.4
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 8.3e-06 56.2 138 34.8


User provided reference genes

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