Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 0.0e+00 1323.5 696 100.0
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 2.0e-74 284.6 709 36.5
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 2.6e-58 231.1 744 32.7
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 2.4e-56 224.6 348 46.6
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 5.1e-46 190.3 785 30.4
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.9e-40 171.8 666 30.6
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.9e-33 147.1 762 29.4
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 2.3e-30 138.3 293 38.6
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.9e-29 135.2 794 28.1
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 7.4e-29 133.3 755 29.0
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 9.6e-29 132.9 375 33.9
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.6e-28 132.1 375 33.9
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 4.8e-28 130.6 201 46.3
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 9.0e-27 126.3 356 34.6
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.2e-26 125.9 776 26.5
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.5e-26 124.0 493 30.4
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 1.0e-25 122.9 676 27.8
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.7e-25 122.1 129 55.8
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.8e-25 120.9 357 34.2
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.1e-24 119.4 301 35.9
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.1e-24 119.4 433 29.3
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 1.4e-24 119.0 705 28.8
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.9e-24 118.6 467 30.8
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 5.5e-24 117.1 307 34.2
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 9.3e-24 116.3 724 28.0
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 4.6e-23 114.0 681 28.8
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 1.0e-22 112.8 704 27.0
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 1.3e-22 112.5 688 27.8
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 2.3e-22 111.7 293 36.2
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 8.7e-22 109.8 531 28.8
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 8.7e-22 109.8 713 26.8
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 8.7e-22 109.8 760 26.1
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.1e-21 109.4 338 33.4
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 5.7e-21 107.1 273 33.3
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 9.6e-21 106.3 721 27.2
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 1.6e-20 105.5 214 39.3
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 2.8e-20 104.8 770 24.8
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 4.8e-20 104.0 301 32.9
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 1.1e-19 102.8 247 37.7
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.1e-19 102.8 268 35.1
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.8e-19 102.1 486 28.6
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 5.3e-19 100.5 705 25.8
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 6.9e-19 100.1 344 31.4
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 9.0e-19 99.8 528 27.8
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 1.2e-18 99.4 764 26.0
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 1.5e-18 99.0 373 30.8
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 1.0e-17 96.3 722 27.4
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.0e-17 96.3 225 39.6
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.3e-17 95.9 237 35.0
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.7e-17 95.5 286 33.6
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 5.0e-17 94.0 699 26.0
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 1.1e-16 92.8 360 29.4
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.4e-16 92.4 299 32.4
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.4e-16 92.4 741 26.0
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 1.9e-16 92.0 731 25.0
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 2.5e-16 91.7 718 25.3
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 2.5e-16 91.7 739 25.4
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 3.2e-16 91.3 713 26.1
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 4.2e-16 90.9 288 31.2
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 4.2e-16 90.9 282 33.0
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 5.5e-16 90.5 293 34.1
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 5.5e-16 90.5 254 33.5
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 7.2e-16 90.1 817 24.8
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 7.2e-16 90.1 258 33.3
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 9.3e-16 89.7 248 32.7
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 9.3e-16 89.7 253 35.2
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 9.3e-16 89.7 273 34.4
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.2e-15 89.4 317 32.8
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.2e-15 89.4 317 32.8
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.2e-15 89.4 458 29.3
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.1e-15 88.6 198 35.9
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 2.7e-15 88.2 573 25.3
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 2.7e-15 88.2 441 27.9
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 6.1e-15 87.0 187 39.0
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 7.9e-15 86.7 219 38.4
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 1.3e-14 85.9 86 55.8
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 2.3e-14 85.1 746 25.6
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 5.1e-14 84.0 725 25.5
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 5.1e-14 84.0 249 33.7
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 5.1e-14 84.0 720 25.3
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 6.7e-14 83.6 278 31.3
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 8.7e-14 83.2 101 51.5
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 8.7e-14 83.2 474 27.2
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 1.1e-13 82.8 279 31.5
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 1.1e-13 82.8 279 31.5
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.1e-13 82.8 211 34.1
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.1e-13 82.8 820 24.6
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.9e-13 82.0 253 34.8
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 2.5e-13 81.6 551 24.7
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 2.5e-13 81.6 299 30.4
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.3e-13 81.3 237 32.9
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 4.3e-13 80.9 269 32.3
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 4.3e-13 80.9 309 29.1
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 7.4e-13 80.1 562 24.9
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 9.7e-13 79.7 447 28.6
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.3e-12 79.3 314 29.6
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.3e-12 79.3 262 32.4
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.6e-12 79.0 727 25.4
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 1.6e-12 79.0 339 27.7
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.8e-12 78.2 180 36.1
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.8e-12 78.2 180 36.1
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 3.7e-12 77.8 759 25.8
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 4.8e-12 77.4 274 31.8
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 8.2e-12 76.6 268 31.3
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.4e-11 75.9 427 25.8
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.4e-11 75.9 234 31.2
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 1.4e-11 75.9 742 24.1
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 2.4e-11 75.1 425 26.4
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.4e-11 75.1 512 27.7
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 2.4e-11 75.1 309 30.4
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 3.1e-11 74.7 762 24.0
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 1.2e-10 72.8 366 26.2
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 1.2e-10 72.8 467 26.8
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.5e-10 72.4 696 23.3
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 1.5e-10 72.4 434 27.4
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.6e-10 71.6 107 44.9
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 1.7e-09 68.9 228 32.0
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 2.2e-09 68.6 113 42.5
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 5.0e-09 67.4 267 29.2
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 5.0e-09 67.4 291 29.6
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 6.5e-09 67.0 237 29.1
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.1e-08 66.2 78 46.2
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 1.9e-08 65.5 183 35.5
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 3.2e-08 64.7 438 26.3
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 4.2e-08 64.3 330 29.1
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.2e-08 63.5 291 29.2
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 9.4e-08 63.2 238 30.3
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 1.2e-07 62.8 261 27.6
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.2e-07 62.8 254 30.7
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 1.2e-07 62.8 79 45.6
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.1e-07 62.0 323 27.9
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 2.1e-07 62.0 94 38.3
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 2.7e-07 61.6 297 26.9
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 3.6e-07 61.2 670 23.6
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 4.6e-07 60.8 39 74.4
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 6.1e-07 60.5 118 39.0
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 7.9e-07 60.1 701 24.0
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 7.9e-07 60.1 327 26.9
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 7.9e-07 60.1 349 28.4
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 7.9e-07 60.1 38 73.7
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 7.9e-07 60.1 38 73.7
Actinidia04568 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.4e-06 59.3 74 47.3
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 1.4e-06 59.3 43 67.4
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 5.1e-06 57.4 724 24.2
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 5.1e-06 57.4 254 28.0


User provided reference genes

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